ID I1J5A4_SOYBN Unreviewed; 927 AA.
AC I1J5A4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 69.
DE RecName: Full=PWI domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100809428 {ECO:0000313|EnsemblPlants:KRH74611};
GN ORFNames=GLYMA_01G031400 {ECO:0000313|EMBL:KRH74611.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH74611.1};
RN [1] {ECO:0000313|EMBL:KRH74611.1, ECO:0000313|EnsemblPlants:KRH74611}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH74611};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH74611.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH74611}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH74611};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH74611.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH74611.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000834; KRH74611.1; -; Genomic_DNA.
DR RefSeq; XP_003517728.1; XM_003517680.3.
DR AlphaFoldDB; I1J5A4; -.
DR SMR; I1J5A4; -.
DR STRING; 3847.I1J5A4; -.
DR PaxDb; 3847-GLYMA01G03810-1; -.
DR EnsemblPlants; KRH74611; KRH74611; GLYMA_01G031400.
DR GeneID; 100809428; -.
DR Gramene; KRH74611; KRH74611; GLYMA_01G031400.
DR KEGG; gmx:100809428; -.
DR eggNOG; KOG2253; Eukaryota.
DR InParanoid; I1J5A4; -.
DR OMA; LSNWEIR; -.
DR OrthoDB; 55687at2759; -.
DR Proteomes; UP000008827; Chromosome 1.
DR ExpressionAtlas; I1J5A4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProt.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR CDD; cd12446; RRM_RBM25; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.20.1390.10; PWI domain; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR002483; PWI_dom.
DR InterPro; IPR036483; PWI_dom_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR034268; RBM25_RRM.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR47334; SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47334:SF2; SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN; 1.
DR Pfam; PF01480; PWI; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00311; PWI; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF101233; PWI domain; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS51025; PWI; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 213..291
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 830..927
FT /note="PWI"
FT /evidence="ECO:0000259|PROSITE:PS51025"
FT REGION 1..69
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 309..361
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 379..499
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 514..534
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 567..599
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 688..709
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 751..811
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 20..35
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 36..69
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 309..348
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 394..408
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 411..499
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 693..709
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 927 AA; 105031 MW; C523A695C3C977EF CRC64;
MADSASSPAT LPPNPQPSQS APDLLSQSAT PPSSTPLATN PNPNPTLLPP PPTLHFLAGT
PPQVPGVLPP SFRPLGPQVP QFSPVPAPNP AYQNPAVPPP GVPGATVAVP PPQMQAMMSY
QVQPGNPAMR PFAPIPNGYA AAPNVTPAGI PRYPPPYGTM VRPVFPARPP GAVNIPTISR
PPVAGIPAVR PIIPPVVRPV VAPSVTPAEK PQNTVYIGKI APTVENEFML SLLQLCGTIK
TWKRPQDLST GTPTSFGFYE FESAEGVLRA LRLLTKLNID GQELKVNVNQ AMKEILELYV
KTKTENLKNK ETQEVGEKNE GEQPSNANED AKVDTEPSNK EASESSNKES HDVANFGIVT
DEDREADCEA LEKITKMIEE RLKTRPLPTP PAQPTGDGSV NLTSEQPVKA RDGDSVVDTE
KNESAENKNE KETNNDNKPT SEHERTESPD RRHDRKSRER DRDRELKREK DRELERYERE
AERERVRKER EQRRRVEEAE RQYETYLKDW EYREREKEKE RQYEKEKEKE RERKRRKEIL
YDEEDEDEDS RKRWRRSVIE EKRKKRLREK EDDLVDRQKE EEEIAEAKKK AEEEQKRQRD
ALKLLSEHVV NGGKENMITE EITNEVKSIV VEQDTVADYS REDHIGDGNS INVIIDESTI
ASVAPTDAQS GGNAPTKKLG FGLVGSGKRT SVPSVFHEED DDDAHKDKKM RPLVPIDYST
EELQAVQPTV SGPTPPNLAA AAEFAKRISS TNFKEEKLDG ERDRSRRSNE KSNHRDRSDE
DGTHNRDENK ERIPGRDRDR DHGSEKLKTS DNKRLLDAKQ LIDMIPKTKE ELFSYEIDWA
VYDKHQLHDR MRPWISKKIK EFLGEEETTL IDYIVSSTQE HVKASQMLER LQIILDEEAE
MFVLKMWRML IFEIKKVESG LALRSKS
//