ID I1JAF9_SOYBN Unreviewed; 646 AA.
AC I1JAF9;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 70.
DE RecName: Full=C3H1-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100778061 {ECO:0000313|EnsemblPlants:KRH77675};
GN ORFNames=GLYMA_01G227200 {ECO:0000313|EMBL:KRH77675.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH77675};
RN [1] {ECO:0000313|EMBL:KRH77675.1, ECO:0000313|EnsemblPlants:KRH77675}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH77675};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH77675.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH77675}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH77675};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH77675.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH77675.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000834; KRH77675.1; -; Genomic_DNA.
DR RefSeq; XP_003517520.1; XM_003517472.3.
DR AlphaFoldDB; I1JAF9; -.
DR SMR; I1JAF9; -.
DR PaxDb; 3847-GLYMA01G43700-1; -.
DR EnsemblPlants; KRH77675; KRH77675; GLYMA_01G227200.
DR GeneID; 100778061; -.
DR Gramene; KRH77675; KRH77675; GLYMA_01G227200.
DR KEGG; gmx:100778061; -.
DR eggNOG; ENOG502QSSE; Eukaryota.
DR HOGENOM; CLU_028778_0_0_1; -.
DR InParanoid; I1JAF9; -.
DR OMA; YNPHDIL; -.
DR OrthoDB; 1354311at2759; -.
DR Proteomes; UP000008827; Chromosome 1.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12458; RRM_AtC3H46_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR034365; AtC3H46-like_RRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR24009; RNA-BINDING (RRM/RBD/RNP MOTIFS); 1.
DR PANTHER; PTHR24009:SF20; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 214..241
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 335..411
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT ZN_FING 214..241
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 85..114
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 410..434
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 623..646
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 646 AA; 71506 MW; F502BD8E6303D259 CRC64;
MGSCEATNVV LSKIKNFDPE NASKIMGYLL MNLEESELIR VACSPDTVLQ TLVLRVKSHL
GLTLSTPSSP SQFPPSPLNP IARLTGTSSN PFSRGGPTNG FDFTRNPASP SSHSHAWNFP
NNNPISPKST PLLSYDNIRA LSPRVNGDCD FVDEQQVNEY FPFLNDSSKN EDLVDPRLEL
GVGAQNWHSG DSHLHRRSYS ASDVGFGCDE AAPGLGYKPC LYFARGFCKN GTNCKFLHGA
FTDSLDAIVG SPSKLEGMEQ REEFVRFKAP QLQRIASGPS AAAREKYYEF LMQESQRAAA
AFMMGEEFYN FGWDRPERND FLAAISGEKP NSASRQIYLT FPAESTFKDE DVSEYFSKFG
PVQDVRIPYQ QKRMFGFVTF VYPETVRLIL SKGNPHFICD SRVLVKPYKE KGKVPDKRQQ
QQQQQLERGD LSPCLSPSGF GSKEPYDFHL GARMLYNPHD ILLRRKIEEQ AELQQVLELQ
ERRLKNLQLP DFKNNPIHHH QRSLSVGTPL VLPHQLHSHI NDAGLSPDSI KGDITGYSGS
FTSTNSLGIA SEQQQQLQKE VDPAHIDDSE SRNLMESGNA EGVDLSNSVG QALPDSLFAS
PTKAAGGYHA DFSTLAEVNE SAVFSASSSS QDKLEPTTSS SDVASH
//
