ID I1JFQ7_SOYBN Unreviewed; 309 AA.
AC I1JFQ7;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 68.
DE RecName: Full=RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483};
DE EC=2.3.2.27 {ECO:0000256|ARBA:ARBA00012483};
GN Name=100787523 {ECO:0000313|EnsemblPlants:KRH71657};
GN ORFNames=GLYMA_02G161600 {ECO:0000313|EMBL:KRH71657.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH71657.1};
RN [1] {ECO:0000313|EMBL:KRH71657.1, ECO:0000313|EnsemblPlants:KRH71657}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH71657};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH71657.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH71657}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH71657};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH71657.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH71657.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27; Evidence={ECO:0000256|ARBA:ARBA00000900};
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DR EMBL; CM000835; KRH71657.1; -; Genomic_DNA.
DR EMBL; CM000835; KRH71658.1; -; Genomic_DNA.
DR EMBL; CM000835; KRH71659.1; -; Genomic_DNA.
DR EMBL; CM000835; KRH71660.1; -; Genomic_DNA.
DR EMBL; CM000835; KRH71661.1; -; Genomic_DNA.
DR RefSeq; XP_003518992.1; XM_003518944.3.
DR RefSeq; XP_006575155.1; XM_006575092.2.
DR AlphaFoldDB; I1JFQ7; -.
DR SMR; I1JFQ7; -.
DR PaxDb; 3847-GLYMA02G22760-1; -.
DR EnsemblPlants; KRH71657; KRH71657; GLYMA_02G161600.
DR EnsemblPlants; KRH71658; KRH71658; GLYMA_02G161600.
DR EnsemblPlants; KRH71659; KRH71659; GLYMA_02G161600.
DR EnsemblPlants; KRH71660; KRH71660; GLYMA_02G161600.
DR EnsemblPlants; KRH71661; KRH71661; GLYMA_02G161600.
DR GeneID; 100787523; -.
DR Gramene; KRH71657; KRH71657; GLYMA_02G161600.
DR Gramene; KRH71658; KRH71658; GLYMA_02G161600.
DR Gramene; KRH71659; KRH71659; GLYMA_02G161600.
DR Gramene; KRH71660; KRH71660; GLYMA_02G161600.
DR Gramene; KRH71661; KRH71661; GLYMA_02G161600.
DR KEGG; gmx:100787523; -.
DR eggNOG; KOG0800; Eukaryota.
DR HOGENOM; CLU_034892_1_2_1; -.
DR InParanoid; I1JFQ7; -.
DR OMA; AQTDSNP; -.
DR OrthoDB; 5474929at2759; -.
DR Proteomes; UP000008827; Chromosome 2.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central.
DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
DR CDD; cd16667; RING-H2_RNF126-like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR039525; RNF126-like_zinc-ribbon.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR15710; E3 UBIQUITIN-PROTEIN LIGASE PRAJA; 1.
DR PANTHER; PTHR15710:SF34; E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED; 1.
DR Pfam; PF13639; zf-RING_2; 1.
DR Pfam; PF14369; zinc_ribbon_9; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 186..227
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REGION 234..261
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 273..309
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 234..260
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 273..294
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 309 AA; 34489 MW; 5A213AD8E0CD1035 CRC64;
MSNSRNTHWC YSCRRPVWLG RRDAVCPSCN EGFVHELNDM VHVNPFDLFE MDNNEERDQR
LGLMETFSAF MRHQMADRGR SHDIRAQTDS NPEHSAGFAP LLIFGGQIPF RLSGHGGFEA
LFNGAPGIGL TRGNTGDYFI GPGLEELFEQ LSANNRQGPP PASRSSIDAM PTIKITQRHL
RSDSHCPVCK DKFEVGSEAR QMPCNHLYHS DCIVPWLVQH NSCPVCRQEL LPQGLSSSNR
STNGRSRSAS LSSSGRESHG RRNPFSFLWP FRSSHSSSND EATGSSSPTP TIPENSHHHH
AGYSGWPFE
//
