ID I1JUR5_SOYBN Unreviewed; 497 AA.
AC I1JUR5;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 65.
DE RecName: Full=S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881};
GN Name=100800084 {ECO:0000313|EnsemblPlants:KRH62006};
GN ORFNames=GLYMA_04G079800 {ECO:0000313|EMBL:KRH62007.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH62007.1};
RN [1] {ECO:0000313|EMBL:KRH62007.1, ECO:0000313|EnsemblPlants:KRH62006}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH62006};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH62007.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH62006}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH62006};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH62007.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH62007.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS5 family.
CC {ECO:0000256|ARBA:ARBA00008945, ECO:0000256|RuleBase:RU003823}.
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DR EMBL; CM000837; KRH62006.1; -; Genomic_DNA.
DR EMBL; CM000837; KRH62007.1; -; Genomic_DNA.
DR RefSeq; XP_003522686.1; XM_003522638.3.
DR AlphaFoldDB; I1JUR5; -.
DR SMR; I1JUR5; -.
DR STRING; 3847.I1JUR5; -.
DR PaxDb; 3847-GLYMA04G08460-1; -.
DR EnsemblPlants; KRH62006; KRH62006; GLYMA_04G079800.
DR EnsemblPlants; KRH62007; KRH62007; GLYMA_04G079800.
DR GeneID; 100800084; -.
DR Gramene; KRH62006; KRH62006; GLYMA_04G079800.
DR Gramene; KRH62007; KRH62007; GLYMA_04G079800.
DR KEGG; gmx:100800084; -.
DR eggNOG; KOG2646; Eukaryota.
DR HOGENOM; CLU_040866_0_0_1; -.
DR InParanoid; I1JUR5; -.
DR OMA; KWMNKID; -.
DR OrthoDB; 463927at2759; -.
DR Proteomes; UP000008827; Chromosome 4.
DR GO; GO:0005763; C:mitochondrial small ribosomal subunit; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IBA:GO_Central.
DR Gene3D; 3.30.160.20; -; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR005324; Ribosomal_uS5_C.
DR InterPro; IPR013810; Ribosomal_uS5_N.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR PANTHER; PTHR48344; RIBOSOMAL PROTEIN S5 C-TERMINAL DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR48344:SF1; RIBOSOMAL PROTEIN S5 C-TERMINAL DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00333; Ribosomal_S5; 1.
DR Pfam; PF03719; Ribosomal_S5_C; 1.
DR SUPFAM; SSF54768; dsRNA-binding domain-like; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR PROSITE; PS50881; S5_DSRBD; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|PROSITE-
KW ProRule:PRU00268};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|PROSITE-
KW ProRule:PRU00268}.
FT DOMAIN 340..403
FT /note="S5 DRBM"
FT /evidence="ECO:0000259|PROSITE:PS50881"
FT REGION 109..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 239..278
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 285..333
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 240..261
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 262..276
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 497 AA; 57151 MW; 5B9839D6161BB09F CRC64;
MGYIHHGRTG LRHILRFRTA TGVVSNSGRS QSRAAFPSHS PILGNVLFFS TGDKYLNEIT
AEVERDRRRE RNERLRLGLD TADIDTESEQ DYMGVGPLIA KLEKEMLKES PELNRYEEPT
DSDDDSDEET KDEADKKMSD FEKKRDKHTD LLKNFIEAET LDDAFKCMTK IDNFENKHFR
LRSEYRVIGE LMNRLKVSTE LKDKFVLQNK LNRALRLVRW KEAYDPDNPA NYGVIQREQP
TADAKEEAEF EKEKQKQIEE GDNADADDDD EQEFDDMKEK DNVLMAKLEA IDRKLEEKLA
ELEYTFGRKG KALEEEIKDL AEERNELTEQ KRKPLYRKGF DTRLIDMNRT CKVTKGGQVV
KYTAMVACGN YNGVIGFAKA KGPAVPVALQ KAYEKCFQNL HYVERHEEHT IAHAVQTSYK
KTKVYLWPAP TTTGMKAGRS VEAILHLAGL KNVKSKVIGS RNPHNTVKAV FKALNAIETP
RDVQEKFGRT VVEKYLL
//
