ID I1JXS8_SOYBN Unreviewed; 990 AA.
AC I1JXS8;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 72.
DE RecName: Full=Ribonuclease {ECO:0000256|PIRNR:PIRNR017179};
GN Name=100802766 {ECO:0000313|EnsemblPlants:KRH63899};
GN ORFNames=GLYMA_04G203000 {ECO:0000313|EMBL:KRH63899.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH63899};
RN [1] {ECO:0000313|EMBL:KRH63899.1, ECO:0000313|EnsemblPlants:KRH63899}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH63899};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH63899.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH63899}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH63899};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH63899.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH63899.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Cytoprotective ribonuclease (RNase) required for resistance
CC to abiotic stresses, acting as a positive regulator of mRNA decapping
CC during stress. {ECO:0000256|PIRNR:PIRNR017179}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|PIRNR:PIRNR017179}.
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DR EMBL; CM000837; KRH63899.1; -; Genomic_DNA.
DR RefSeq; XP_003523184.1; XM_003523136.3.
DR AlphaFoldDB; I1JXS8; -.
DR SMR; I1JXS8; -.
DR STRING; 3847.I1JXS8; -.
DR PaxDb; 3847-GLYMA04G38010-1; -.
DR EnsemblPlants; KRH63899; KRH63899; GLYMA_04G203000.
DR GeneID; 100802766; -.
DR Gramene; KRH63899; KRH63899; GLYMA_04G203000.
DR KEGG; gmx:100802766; -.
DR eggNOG; KOG2039; Eukaryota.
DR HOGENOM; CLU_005966_2_0_1; -.
DR InParanoid; I1JXS8; -.
DR OMA; SRDYALM; -.
DR OrthoDB; 375531at2759; -.
DR Proteomes; UP000008827; Chromosome 4.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016442; C:RISC complex; IEA:UniProtKB-UniRule.
DR GO; GO:0004518; F:nuclease activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0006402; P:mRNA catabolic process; IBA:GO_Central.
DR GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:InterPro.
DR CDD; cd20443; Tudor_AtTudor1-like; 1.
DR Gene3D; 2.30.30.140; -; 1.
DR Gene3D; 2.40.50.90; -; 5.
DR InterPro; IPR016685; Silence_cplx_Nase-comp_TudorSN.
DR InterPro; IPR035437; SNase_OB-fold_sf.
DR InterPro; IPR016071; Staphylococal_nuclease_OB-fold.
DR InterPro; IPR002999; Tudor.
DR InterPro; IPR047395; Tudor_AtTudor1-like.
DR PANTHER; PTHR12302; EBNA2 BINDING PROTEIN P100; 1.
DR PANTHER; PTHR12302:SF2; STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF00565; SNase; 4.
DR Pfam; PF00567; TUDOR; 1.
DR PIRSF; PIRSF017179; RISC-Tudor-SN; 1.
DR SMART; SM00318; SNc; 4.
DR SMART; SM00333; TUDOR; 1.
DR SUPFAM; SSF50199; Staphylococcal nuclease; 5.
DR SUPFAM; SSF63748; Tudor/PWWP/MBT; 1.
DR PROSITE; PS50830; TNASE_3; 5.
DR PROSITE; PS50304; TUDOR; 1.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|PIRNR:PIRNR017179};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 10..151
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 186..365
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 379..557
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 587..714
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 780..845
FT /note="Tudor"
FT /evidence="ECO:0000259|PROSITE:PS50304"
FT DOMAIN 854..968
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT REGION 226..257
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 950..990
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 990 AA; 108994 MW; C3AF32B5E6D446F2 CRC64;
MASTASGATG WYRGRVKAVP SGDCLVIVAI SSTKPGPLPE KTITLSSLIA PRLARRGGVD
EPFAWESREF LRKLCIGKEV TFRVDYNVPS ISRDFGTVFV GDKNVAMLVV SQGWVKVREQ
GQQKGEVSPY LAELLRLEEQ AKQEGLGRWS KVPGAAEASI RNLPPSALGD PSNFDAMTFL
NAKKGLPMEA VVEQVRDGST LRIYLLPEFQ FVQVFVAGIQ SPQMGRRAAP ESVVEPELTS
DDTNGDVPGE PRAPLTSAQR LAVSTSAAET AADPFAHDAK FFTEMRVLNR EVRLVLEGVD
KFSNLIGSVY YPDGESAKDL ALELVENGYA KYVDWSANMM EEEAKQKLKT AELQAKKDRL
RMWTNYVPPP SNSKAIHNQN FSGKVVEVVS GDCIVVADDS IPYGSPLAER RVNLSSIRCP
KMGNPRRDEK PAPYAREAKE FLRTRLIGRQ VNVQMEYSRK VSPTDGSVVP SAADSRVMDF
GSVFLLSGAK VDNDDAPSSA PPAGSQQNGV NVAELIVGRG FGTVIRHRDF EERSNYYDSL
LAAESRAISG RKGTHSAKDP PVMHITDLTM ASAKKARDFL PFLHRSRRVP AVVEYVLSGH
RFKLLIPKET CSIAFSFSGV RCPGRDEPYS DEAIALMRRK IMQRDVEIEV ETVDRTGTFL
GSLWESRTNV AITLLEAGLA KLHTSFGSDR IPDFHLLDQA EQSAKRQKLK IWENFVEGEE
VSNGAAVENK QQEVLKVIVT EVLGGGKFYV QTVGDQKIAS IQQQLASLNL KDAPVLGAFN
PKKGDIVLCY FHADKSWYRA MVVNTPRGPV ESPNDLFEVF YIDYGNQEVV PYSQLRPVDP
SVSAAPGLAQ LCSLAYIKIP NLEEDFGQEA AEYLSELTLN SGKEFRAKVE EKDTSGGKVK
GQGTGTVLAV TLVAVDAEIS VNAAMLQEGL ARTEKRNRWD RKDRQTALDN LENFQEEAKT
SRRGMWQYGD IQSDDEDTAP PPRKAAGGRK
//
