ID I1K2U6_SOYBN Unreviewed; 649 AA.
AC I1K2U6;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 66.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100818060 {ECO:0000313|EnsemblPlants:KRH58357};
GN ORFNames=GLYMA_05G122700 {ECO:0000313|EMBL:KRH58358.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH58358.1};
RN [1] {ECO:0000313|EMBL:KRH58358.1, ECO:0000313|EnsemblPlants:KRH58357}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH58357};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH58358.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH58357}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH58357};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH58358.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH58358.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000838; KRH58357.1; -; Genomic_DNA.
DR EMBL; CM000838; KRH58358.1; -; Genomic_DNA.
DR RefSeq; XP_003524089.1; XM_003524041.3.
DR RefSeq; XP_014631115.1; XM_014775629.1.
DR AlphaFoldDB; I1K2U6; -.
DR SMR; I1K2U6; -.
DR STRING; 3847.I1K2U6; -.
DR PaxDb; 3847-GLYMA05G25230-1; -.
DR EnsemblPlants; KRH58357; KRH58357; GLYMA_05G122700.
DR EnsemblPlants; KRH58358; KRH58358; GLYMA_05G122700.
DR GeneID; 100818060; -.
DR Gramene; KRH58357; KRH58357; GLYMA_05G122700.
DR Gramene; KRH58358; KRH58358; GLYMA_05G122700.
DR KEGG; gmx:100818060; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; I1K2U6; -.
DR OMA; SRCGDIM; -.
DR OrthoDB; 1129877at2759; -.
DR Proteomes; UP000008827; Chromosome 5.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 9.
DR PANTHER; PTHR47924:SF204; DYW_DEAMINASE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47924; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS51375; PPR; 7.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 68..102
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 133..167
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 232..262
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 276..310
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 338..368
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 369..403
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 470..504
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 649 AA; 73315 MW; 9D88BFAAC95298F4 CRC64;
MASLYVRLSR RNIVEQLPRI RCCHVSASPT HNYNSSPLNQ SNKKLSNLIR SGRISEARTL
FDSMKRRDTV TWNSMISGYV QRREIARARQ LFDEMPRRDV VSWNLIVSGY FSCCGSRFVE
EGRRLFELMP QRDCVSWNTV ISGYAKNGRM DQALKLFNAM PEHNAVSYNA VITGFLLNGD
VESAVGFFRT MPEHDSTSLC ALISGLVRNG ELDLAAGILR ECGNGDDGKD DLVHAYNTLI
AGYGQRGHVE EARRLFDVIP DDDDDGNEGK RRFRRNVVSW NSMMMCYVKA GDIVFARELF
DRMVERDNCS WNTLISCYVQ ISNMEEASKL FREMPSPDVL SWNSIISGLA QKGDLNLAKD
FFERMPHKNL ISWNTIIAGY EKNEDYKGAI KLFSEMQLEG ERPDKHTLSS VISVSTGLVD
LYLGKQLHQL VTKTVLPDSP INNSLITMYS RCGAIVDACT VFNEIKLYKD VITWNAMIGG
YASHGSAAEA LELFKLMKRL KIHPTYITFI SVLNACAHAG LVEEGWRQFK SMINDYGIEP
RVEHFASLVD ILGRQGQLQE AMDLINTMPF KPDKAVWGAL LGACRVHNNV ELALVAADAL
IRLEPESSAP YVLLYNMYAN LGQWDDAESV RVLMEEKNVK KQAGYSWVD
//
