ID I1K853_SOYBN Unreviewed; 933 AA.
AC I1K853;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 65.
DE RecName: Full=RST domain-containing protein {ECO:0000259|PROSITE:PS51879};
GN Name=100797127 {ECO:0000313|EnsemblPlants:KRH52077};
GN ORFNames=GLYMA_06G045200 {ECO:0000313|EMBL:KRH52076.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH52077};
RN [1] {ECO:0000313|EMBL:KRH52076.1, ECO:0000313|EnsemblPlants:KRH52077}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH52077};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH52076.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH52077}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH52077};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH52076.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH52076.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF4 family.
CC {ECO:0000256|ARBA:ARBA00006178}.
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DR EMBL; CM000839; KRH52076.1; -; Genomic_DNA.
DR EMBL; CM000839; KRH52077.1; -; Genomic_DNA.
DR EMBL; CM000839; KRH52078.1; -; Genomic_DNA.
DR RefSeq; XP_003527732.1; XM_003527684.3.
DR RefSeq; XP_006581258.1; XM_006581195.2.
DR RefSeq; XP_006581259.1; XM_006581196.2.
DR AlphaFoldDB; I1K853; -.
DR STRING; 3847.I1K853; -.
DR PaxDb; 3847-GLYMA06G04820-3; -.
DR EnsemblPlants; KRH52076; KRH52076; GLYMA_06G045200.
DR EnsemblPlants; KRH52077; KRH52077; GLYMA_06G045200.
DR EnsemblPlants; KRH52078; KRH52078; GLYMA_06G045200.
DR GeneID; 100797127; -.
DR Gramene; KRH52076; KRH52076; GLYMA_06G045200.
DR Gramene; KRH52077; KRH52077; GLYMA_06G045200.
DR Gramene; KRH52078; KRH52078; GLYMA_06G045200.
DR KEGG; gmx:100797127; -.
DR eggNOG; KOG2341; Eukaryota.
DR HOGENOM; CLU_011622_0_0_1; -.
DR InParanoid; I1K853; -.
DR OMA; THIIRMS; -.
DR OrthoDB; 1222810at2759; -.
DR Proteomes; UP000008827; Chromosome 6.
DR ExpressionAtlas; I1K853; baseline and differential.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR CDD; cd08045; TAF4; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR022003; RST.
DR InterPro; IPR045144; TAF4.
DR InterPro; IPR007900; TAF4_C.
DR PANTHER; PTHR15138; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR PANTHER; PTHR15138:SF14; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR Pfam; PF12174; RST; 1.
DR Pfam; PF05236; TAF4; 1.
DR PROSITE; PS51879; RST; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 188..259
FT /note="RST"
FT /evidence="ECO:0000259|PROSITE:PS51879"
FT REGION 1..146
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 166..190
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 297..362
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 378..504
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 538..627
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 642..662
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 751..798
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 828..899
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 33..146
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 297..319
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 335..362
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 378..447
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 456..488
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 542..587
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 610..627
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 845..863
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 933 AA; 102188 MW; 59EA0B037B1AED87 CRC64;
MDPSIVKLLE DDEDESMHSG ADVEAFQAAL NRDIGGDTST SQLSGSDTGS NNSLSQSLPK
QPTSTHDKQS DCQNQEPKVV QQQEQQHSSE MEQKPQQPLV EQLQNAASQD ANNLPSSQKQ
SQDESAQGHT AQAPHQNSQT NVTQNSEKDP VFNHEAVNTH NPNHESQYAK LQQMSNQQAT
VKEQPGSQVD RNKQVPFAML LPMLIPQLPK DRAMQLQTLF NKLKKDEMPK DQFVRLMKGI
VGDQMLRLAL TKVQLQTRSN PAPTGQQHPH VRTPNVNSGA TKFNDPHALA HLHQRSMNAA
ADQSNNTSSA VQVKNEPTYP TMDINAKKSR ELDVQVESQG AQLNQLPSSS SNAVSQETER
SSLHLQGLNK EQQQHLHFPS AYGNSGGNYN PFSGSTSSST SSIRPQPFDS HMRQIPHQSI
SPNQLGGSTQ GLIGLTKLDQ QNSFNDPKRM PGGFVSPVAN NTTSQQTSNS WQPSANKEQS
SGSFSSVPYV KKEPNDLSTE QQHRHNLSKL HGLHSVNSVQ NEQGSSANQG TLKEEFSRGF
PASTSMPHTT SSLLPLNSAS PSVSQLDPSA TLSPQIPSNT SVINARTPLK KPSPGQKKPI
EALGSSPPPP SKKQKVSGAS LEPSIEQLND VTAVSGVDLR EEEEQLFSGP KEDSRASEAS
RRVVQEEEES LILQKAPLQR KLIEIINECG LKGVSNDLER CLSLCVEERM RGVISNVIRM
SKQRVDLEKT SHRTVVTSDV RQQILTMNKK AREEWEKKQS ETEKLRKLND VDGNAGIDGD
KEKDEGRTKA TKVNKEVDDK MRTNAANVAA RAAVGGDDML SKWQLMAEQA RQKKRGGGMD
ASSGSQPAKD VSQKSSSTSG RSTKDNQARE KKGPTSGAGR KFGRSHATTP QNSIARSISV
KDVIAVLERE PQMSKSSLLY RLYERIHSDT STE
//
