ID I1KGZ4_SOYBN Unreviewed; 661 AA.
AC I1KGZ4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=BED-type domain-containing protein {ECO:0000259|PROSITE:PS50808};
GN Name=106799409 {ECO:0000313|EnsemblPlants:KRH47428};
GN ORFNames=GLYMA_07G029100 {ECO:0000313|EMBL:KRH47428.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH47428.1};
RN [1] {ECO:0000313|EMBL:KRH47428.1, ECO:0000313|EnsemblPlants:KRH47428}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH47428};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH47428.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH47428}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH47428};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH47428.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH47428.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000840; KRH47428.1; -; Genomic_DNA.
DR RefSeq; XP_014633163.1; XM_014777677.1.
DR AlphaFoldDB; I1KGZ4; -.
DR STRING; 3847.I1KGZ4; -.
DR PaxDb; 3847-GLYMA07G03280-1; -.
DR EnsemblPlants; KRH47428; KRH47428; GLYMA_07G029100.
DR GeneID; 106799409; -.
DR Gramene; KRH47428; KRH47428; GLYMA_07G029100.
DR KEGG; gmx:106799409; -.
DR eggNOG; KOG1121; Eukaryota.
DR HOGENOM; CLU_009123_1_2_1; -.
DR InParanoid; I1KGZ4; -.
DR OMA; IDDQCKW; -.
DR OrthoDB; 449308at2759; -.
DR Proteomes; UP000008827; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IEA:UniProt.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; BED FINGER-RELATED; 1.
DR PANTHER; PTHR23272:SF15; BED-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; hAT-like_RNase-H; 1.
DR SMART; SM00614; ZnF_BED; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 27..87
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 91..115
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 11..26
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 661 AA; 75600 MW; 36AF6A04E9FE2784 CRC64;
MEFVARATPD NNDEISDSGT QPNKQMRKKS MVWDYFTVET VGAGCTRAYC KQCKKSFSYI
TDSKLSGTSH LKRHISLGIC RVLWEKNQQR SYPKTGGSLD TANPPKKQPR ATPGFAGNGI
SFDQERCNHD VAKMIILHDY PLHIVKQQGF IDFVRILQPQ FNPLCLNSVE GDCVAIYLRK
KQNLLNVING IPGQVNLTLD LWTSNQAMGY VFVRGHFIDS DWKLHRPILN VVTVPFPVSD
DSLNQTLVTC LSDWHLEGRL FTLALDKSFS SEAVMGNLRG LLFVKNPAIL NGQLLNQNCY
ARVLSRLAAD ALWTMRETIC KVRESVKHVK SSESHKRKFI ELKQHLQVPS MMDLSIDDQC
KWDTTYHMLV AACELKEVFT CLDTIDPDYR MTLTMGDWKQ VDTLCTYLKY LYDAAIILTV
QPCPTSNLFF AEVSKVQVEL THAAFSQDPF LSSLFLPLHK NFDQYWRESC LILAIAVAMD
PRHKMKLVEF TFAKIFGENA EEWIKIVEDG LRELFIEYSM QMFLTTTNGD EGDDIMIKKT
FLEGSIDCSL FVDGDEFSDY EFYISDFTGN PQFKSELDEY LDEPLLTRVE EFDILSWWRV
NGLKYPTLSR IASDILSLPV STLSADSIFD MQIRKMDSYR SSLSSLTLEA LICAKDWFQS
E
//
