ID I1KKF3_SOYBN Unreviewed; 439 AA.
AC I1KKF3;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 66.
DE RecName: Full=RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089};
GN Name=100777141 {ECO:0000313|EnsemblPlants:KRH49385};
GN ORFNames=GLYMA_07G150500 {ECO:0000313|EMBL:KRH49385.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH49385};
RN [1] {ECO:0000313|EMBL:KRH49385.1, ECO:0000313|EnsemblPlants:KRH49385}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH49385};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH49385.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH49385}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH49385};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH49385.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH49385.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000840; KRH49385.1; -; Genomic_DNA.
DR RefSeq; XP_006583656.1; XM_006583593.2.
DR AlphaFoldDB; I1KKF3; -.
DR STRING; 3847.I1KKF3; -.
DR PaxDb; 3847-GLYMA07G18240-1; -.
DR EnsemblPlants; KRH49385; KRH49385; GLYMA_07G150500.
DR GeneID; 100777141; -.
DR Gramene; KRH49385; KRH49385; GLYMA_07G150500.
DR KEGG; gmx:100777141; -.
DR eggNOG; KOG4275; Eukaryota.
DR HOGENOM; CLU_040868_1_0_1; -.
DR InParanoid; I1KKF3; -.
DR OMA; SHREWRY; -.
DR OrthoDB; 1213307at2759; -.
DR Proteomes; UP000008827; Chromosome 7.
DR ExpressionAtlas; I1KKF3; baseline and differential.
DR GO; GO:0005768; C:endosome; IBA:GO_Central.
DR GO; GO:0009705; C:plant-type vacuole membrane; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central.
DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR032010; APD1-4_M.
DR InterPro; IPR032008; APD1-4_N.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46858:SF15; E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED; 1.
DR PANTHER; PTHR46858; OS05G0521000 PROTEIN; 1.
DR Pfam; PF16041; APD1-4_M; 1.
DR Pfam; PF16040; APD1-4_N; 1.
DR Pfam; PF13920; zf-C3HC4_3; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT TRANSMEM 55..74
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 291..312
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 388..427
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REGION 326..350
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 326..341
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 439 AA; 47876 MW; E743673B1CA6B793 CRC64;
MAEPHSTAAI LPPSTARLEE TPSGSSQTPL RSGRGGWSIV DGSFAIVRDN TCSCFVVVFS
LWFFVSMTMI LGVYGSMTIV LGPKSSIVFQ PSPVFVQSVK VENLKANPGP GPILYGTYRY
PPLDVVTTWG ESINVSLPSG SYKEWKYYLN CGSSINISYH VSSKSSSVFL IIAEGDVSLT
RWLEDPTEPN TTLSWNVIHG TGMITQDIFW SSSYYVALGN LDEDVEVALN LSIRASLHNT
TNAFYKCDLA NGPCSLNLLF SDGSAAVLVT PGPQQNASNE WYVKLSYGPR WVTYIFGIGG
LTLLVFGAFN FLNKLQCAHE DRAGVRSEGT ERQRAPLLPH KDDDLSSWGS SYESLPQDEK
DLGFLPGGPI DGKTLVDGET SNNTRHLCAI CFDAPRDCFF LPCGHCVACF ACGTRIAEAA
GTCPVCRRNM KKVRKIFTV
//
