ID I1L2P4_SOYBN Unreviewed; 1235 AA.
AC I1L2P4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 72.
DE RecName: Full=CHY-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100783072 {ECO:0000313|EnsemblPlants:KRH38156};
GN ORFNames=GLYMA_09G115100 {ECO:0000313|EMBL:KRH38156.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH38156};
RN [1] {ECO:0000313|EMBL:KRH38156.1, ECO:0000313|EnsemblPlants:KRH38156}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH38156};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH38156.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH38156}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH38156};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH38156.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH38156.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000842; KRH38156.1; -; Genomic_DNA.
DR RefSeq; XP_006587225.1; XM_006587162.2.
DR AlphaFoldDB; I1L2P4; -.
DR SMR; I1L2P4; -.
DR STRING; 3847.I1L2P4; -.
DR PaxDb; 3847-GLYMA09G18770-1; -.
DR EnsemblPlants; KRH38156; KRH38156; GLYMA_09G115100.
DR GeneID; 100783072; -.
DR Gramene; KRH38156; KRH38156; GLYMA_09G115100.
DR eggNOG; KOG1940; Eukaryota.
DR InParanoid; I1L2P4; -.
DR OrthoDB; 986379at2759; -.
DR Proteomes; UP000008827; Chromosome 9.
DR ExpressionAtlas; I1L2P4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0098771; P:inorganic ion homeostasis; IEA:UniProt.
DR GO; GO:0055080; P:monoatomic cation homeostasis; IEA:UniProt.
DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR CDD; cd12108; Hr-like; 3.
DR CDD; cd16464; RING-H2_Pirh2-like; 1.
DR Gene3D; 2.20.28.10; -; 1.
DR Gene3D; 1.20.120.520; nmb1532 protein domain like; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR012312; Hemerythrin-like.
DR InterPro; IPR039512; RCHY1_zinc-ribbon.
DR InterPro; IPR008913; Znf_CHY.
DR InterPro; IPR037274; Znf_CHY_sf.
DR InterPro; IPR017921; Znf_CTCHY.
DR InterPro; IPR037275; Znf_CTCHY_sf.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR21319:SF0; AND RING FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G08900)-RELATED; 1.
DR PANTHER; PTHR21319; RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF01814; Hemerythrin; 2.
DR Pfam; PF05495; zf-CHY; 1.
DR Pfam; PF13639; zf-RING_2; 1.
DR Pfam; PF14599; zinc_ribbon_6; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF161219; CHY zinc finger-like; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR SUPFAM; SSF161245; Zinc hairpin stack; 1.
DR PROSITE; PS51266; ZF_CHY; 1.
DR PROSITE; PS51270; ZF_CTCHY; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00601}.
FT DOMAIN 991..1060
FT /note="CHY-type"
FT /evidence="ECO:0000259|PROSITE:PS51266"
FT DOMAIN 1063..1126
FT /note="CTCHY-type"
FT /evidence="ECO:0000259|PROSITE:PS51270"
FT DOMAIN 1127..1169
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
SQ SEQUENCE 1235 AA; 139745 MW; 75BE0F89A96B62D5 CRC64;
MATAGGGGGG GCVAVMAGSC TVSTPSSSYG GGACSSNSKD TLIESPILIF CLFHKAISSE
LQSLHATAFD FVSNRRHSQP HSPLKIMSFS HRCHFLRTLY KHHCNAEDQV IFPALDKRVK
NVAHTYFLEH EGEGLLFDQL FKLPNSNLLN EESYGRELAS CIGALRTSIC QHMFKEKEQV
FPLVIEKFSS EEQGSLVWQF LCSIPVKMMA EFLPWLASYI SSDEYQGLLS CLCTIIPKEK
LLHQVIFGWM EGLKIKHRKC THDTKVQWKD VGMSNLLSHN EKVYSICGSS KTVKRKRVGL
NEDPTNSNIS CPLDELLLWH KAIKQELSDL AETARKIQLS EEFSNLSSFS GRLQFITEVC
ISHSIAEDRV IFPAIKAELH FLQDHTDEEL QFDKLRCLID SIQSAGADSS SAEFYFKLSS
HTEQITDTIL KHFEDEEAQV LPLARKLFSP QRQRELLYES LCSMPLKLIE CVLPWLVGSL
NQTEVRSFLQ NMYMAAPATD HALVTLFSGW ACNGYSRNSC FYSSTTGLCP DRRLMEIPFC
MCEPSFGLNE KSSAIQQEDE NGCIGPVKHG KPESKQDNDV ANLMVTGKTL SSSLNQSCCV
PELRVNASNL GLGSLALTKS LRELSDYPSA PSLNSSLFMW ETNLVSADNQ CIARPIDNIF
KFHKAIRKDL EYLDVESVKL NDCDEIFIQQ FTGRFCLLWG LYRAHSNAED DIVFPALESK
DNLHNVSHSY TLDHQQEEKL FLDISSGLTQ LTQLHELLYK KNWSDHITNC FSNYAGCYDI
DTVQNYNELS TKIQGMCKSI RVTLDQHILR EELELWPLFD RHFSLEEQDK IVGHIIGTTG
AEVLQSMLPW VTSALAQDEQ NKMIDTLKQA TKNTMFCEWL NEWWKGPASS LNITTPGDYS
LGTDAYEDSE HSFLAFRPGW KDIFRMNQNE LESEIRKVSQ DSTLDPRRKA YLIQNLMTSR
WIASQQKSSQ SLGVESSKGD ILETSLSFHD PEKKIFGCEH YKRNCKLRAA CCGKLFTCQF
CHDKVSDHLM DRKATTEMMC MQCQKIQPAG PVCATPSCGS LLMAKYYCSI CKLFDDERTV
YHCPFCNLCR LGKGLGVDFF HCMQCNCCMS KKLVDHICRE KGLETNCPIC CDFLFTSSES
VRALPCGHFM HSACFQAYTC SHYICPICSK SMGDMSVYFG MLDALLASEE LPEEYRNQCQ
DILCNDCHEK GTAPFHWLYH KCGFCGSYNT RNENN
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