ID I1LD88_SOYBN Unreviewed; 577 AA.
AC I1LD88;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 60.
DE RecName: Full=Poly A polymerase head domain-containing protein {ECO:0000259|Pfam:PF01743};
GN ORFNames=GLYMA_10G217700 {ECO:0000313|EMBL:KRH34996.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH34996.1};
RN [1] {ECO:0000313|EMBL:KRH34996.1, ECO:0000313|EnsemblPlants:KRH34996}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH34996};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH34996.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH34996}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH34996};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH34996.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH34996.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the tRNA nucleotidyltransferase/poly(A)
CC polymerase family. {ECO:0000256|ARBA:ARBA00007265,
CC ECO:0000256|RuleBase:RU003953}.
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DR EMBL; CM000843; KRH34996.1; -; Genomic_DNA.
DR RefSeq; XP_006588410.1; XM_006588347.2.
DR AlphaFoldDB; I1LD88; -.
DR STRING; 3847.I1LD88; -.
DR PaxDb; 3847-GLYMA10G36180-1; -.
DR EnsemblPlants; KRH34996; KRH34996; GLYMA_10G217700.
DR Gramene; KRH34996; KRH34996; GLYMA_10G217700.
DR eggNOG; KOG2159; Eukaryota.
DR HOGENOM; CLU_019592_2_1_1; -.
DR InParanoid; I1LD88; -.
DR OMA; CVSHIEV; -.
DR OrthoDB; 5402987at2759; -.
DR Proteomes; UP000008827; Chromosome 10.
DR ExpressionAtlas; I1LD88; baseline and differential.
DR GO; GO:0052929; F:ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001680; P:tRNA 3'-terminal CCA addition; IBA:GO_Central.
DR CDD; cd05398; NT_ClassII-CCAase; 1.
DR Gene3D; 3.30.460.10; Beta Polymerase, domain 2; 1.
DR Gene3D; 1.10.3090.10; cca-adding enzyme, domain 2; 1.
DR InterPro; IPR043519; NT_sf.
DR InterPro; IPR002646; PolA_pol_head_dom.
DR PANTHER; PTHR13734:SF5; CCA TRNA NUCLEOTIDYLTRANSFERASE, MITOCHONDRIAL; 1.
DR PANTHER; PTHR13734; TRNA-NUCLEOTIDYLTRANSFERASE; 1.
DR Pfam; PF01743; PolyA_pol; 1.
DR SUPFAM; SSF81301; Nucleotidyltransferase; 1.
DR SUPFAM; SSF81891; Poly A polymerase C-terminal region-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-binding {ECO:0000256|RuleBase:RU003953};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU003953}.
FT DOMAIN 101..239
FT /note="Poly A polymerase head"
FT /evidence="ECO:0000259|Pfam:PF01743"
SQ SEQUENCE 577 AA; 65594 MW; DDB4425BDA04686F CRC64;
MRMALNIATR LLVPVVHHGP SLTCVRGFSF SQSPTLVLPL HSHRPAKTLL QIATTPSFRS
CGCAPMSTFQ VRDKIDLSDV ERRIFDRLLA TLRHFDLQTQ LRVAGGWVRD KLLGKECYDI
DIALDNMMGT EFVDKVREYL LSIGEDAQGV CVIESNPDQS KHLETARMRL FDIWIDFVNL
RSEEYAENSR IPSKQRFGTA EEDAYRRDLT INSLFYHINT DSVEDFTKRG ISDLKSGKIV
TPLPPKATFL DDPLRVLRAI RFGARFEFTL DEDLKVAAAC DDVKDALAAK ISRERIGTEI
DLMISGNQPV KAMTYICDLT LFWIVFSLPP EFEPYISDGC ERLCISYLDT AWNLIHLLGE
STFTAEQKRL TLCAALFLPL RNTTYREKKA KKIPVVNHII RESLKRKAKD AEMVLNLHQA
SHKFLSLIPC LASSEDVQVV DHDWLGDLVD VPVSSRVRVL TGFLLRELKD YWHVALLIST
ILHPIDIKDE PSQLGKRRDL FNTVENSIIK LGLEKVWDIK QLINGKDVMN ALQLKGGPLV
KESLDKAMAW QLAYPSGTAE ECIEWLREAN SKRIKLQ
//
