ID I1LDL8_SOYBN Unreviewed; 466 AA.
AC I1LDL8;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 69.
DE RecName: Full=Pectate lyase superfamily protein domain-containing protein {ECO:0000259|Pfam:PF12708};
GN Name=100794916 {ECO:0000313|EnsemblPlants:KRH35238};
GN ORFNames=GLYMA_10G230900 {ECO:0000313|EMBL:KRH35238.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH35238.1};
RN [1] {ECO:0000313|EMBL:KRH35238.1, ECO:0000313|EnsemblPlants:KRH35238}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH35238};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH35238.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH35238}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH35238};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH35238.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH35238.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 28 family.
CC {ECO:0000256|ARBA:ARBA00008834, ECO:0000256|RuleBase:RU361169}.
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DR EMBL; CM000843; KRH35238.1; -; Genomic_DNA.
DR RefSeq; XP_003535597.1; XM_003535549.3.
DR AlphaFoldDB; I1LDL8; -.
DR SMR; I1LDL8; -.
DR STRING; 3847.I1LDL8; -.
DR PaxDb; 3847-GLYMA10G37530-1; -.
DR EnsemblPlants; KRH35238; KRH35238; GLYMA_10G230900.
DR GeneID; 100794916; -.
DR Gramene; KRH35238; KRH35238; GLYMA_10G230900.
DR KEGG; gmx:100794916; -.
DR eggNOG; ENOG502QUE1; Eukaryota.
DR HOGENOM; CLU_016031_8_0_1; -.
DR InParanoid; I1LDL8; -.
DR OMA; CAAATYC; -.
DR OrthoDB; 5489079at2759; -.
DR Proteomes; UP000008827; Chromosome 10.
DR GO; GO:0004650; F:polygalacturonase activity; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR Gene3D; 2.160.20.10; Single-stranded right-handed beta-helix, Pectin lyase-like; 1.
DR InterPro; IPR000743; Glyco_hydro_28.
DR InterPro; IPR006626; PbH1.
DR InterPro; IPR024535; Pectate_lyase_SF_prot.
DR InterPro; IPR012334; Pectin_lyas_fold.
DR InterPro; IPR011050; Pectin_lyase_fold/virulence.
DR PANTHER; PTHR31339:SF12; ENDO-POLYGALACTURONASE-LIKE PROTEIN; 1.
DR PANTHER; PTHR31339; PECTIN LYASE-RELATED; 1.
DR Pfam; PF00295; Glyco_hydro_28; 1.
DR Pfam; PF12708; Pectate_lyase_3; 1.
DR SMART; SM00710; PbH1; 3.
DR SUPFAM; SSF51126; Pectin lyase-like; 1.
PE 3: Inferred from homology;
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW Glycosidase {ECO:0000256|ARBA:ARBA00023295, ECO:0000256|RuleBase:RU361169};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU361169};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 51..105
FT /note="Pectate lyase superfamily protein"
FT /evidence="ECO:0000259|Pfam:PF12708"
SQ SEQUENCE 466 AA; 50754 MW; 189ACACB6373AD70 CRC64;
MSQTMKMCPR LRNSYGIGVI SLVLILVSVN VKVASGVYYA INCRKHSAVL TDFGGVGDGI
TSNTKAFQSA ISKLSQYASD GGAMLVVPPG KWLTGPFNLT SHFTLFLDFG AVILASQDES
EWPQLPVLPS YGRGRDAPGG RFSSLIFGTH LTDVVITGNN GLIDGQGAYW WNKFHQGQLT
LTRPYLIEIM YSDQIQISFL TLVNSPTWFV HPVYSSNIII KGLTIKAPVD SPNTDGINPD
SCSNIRIEDC NITSGDDCIA VKSGWDEYGI RFGMPTQHLI IRRITCVSPD SAMIALGSEM
SGGIYDVRAE DLTAINTEAA VRIKTAIGRG GYVKNIFVKG MNLNTMKYVF WITGTYGDHP
DPGYDPKALP YITGINYRDV VATNVTKSAR LEGISNDPFT GICISNVSIQ VSEQQKKLQW
NCSNISGVTS NVTPYPCALL PEKGQLECPF PTDTLPIDNV QLKSCN
//
