ID I1LMS0_SOYBN Unreviewed; 852 AA.
AC I1LMS0;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 24-JAN-2024, entry version 61.
DE RecName: Full=NF-X1-type domain-containing protein {ECO:0000259|SMART:SM00438};
GN ORFNames=GLYMA_11G230200 {ECO:0000313|EMBL:KRH31149.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH31149.1};
RN [1] {ECO:0000313|EMBL:KRH31149.1, ECO:0000313|EnsemblPlants:KRH31149}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH31149};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH31149.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH31149}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH31149};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH31149.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH31149.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the NFX1 family.
CC {ECO:0000256|ARBA:ARBA00007269}.
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DR EMBL; CM000844; KRH31149.1; -; Genomic_DNA.
DR AlphaFoldDB; I1LMS0; -.
DR SMR; I1LMS0; -.
DR STRING; 3847.I1LMS0; -.
DR PaxDb; 3847-GLYMA11G35320-1; -.
DR EnsemblPlants; KRH31149; KRH31149; GLYMA_11G230200.
DR Gramene; KRH31149; KRH31149; GLYMA_11G230200.
DR eggNOG; KOG1952; Eukaryota.
DR HOGENOM; CLU_014224_0_0_1; -.
DR InParanoid; I1LMS0; -.
DR OMA; ACQPMCS; -.
DR Proteomes; UP000008827; Chromosome 11.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000977; F:RNA polymerase II transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central.
DR CDD; cd06008; NF-X1-zinc-finger; 5.
DR CDD; cd16697; RING-CH-C4HC3_NFXL1; 1.
DR InterPro; IPR034078; NFX1_fam.
DR InterPro; IPR000967; Znf_NFX1.
DR PANTHER; PTHR12360:SF1; NF-X1-TYPE ZINC FINGER PROTEIN NFXL1; 1.
DR PANTHER; PTHR12360; NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1; 1.
DR Pfam; PF01422; zf-NF-X1; 10.
DR SMART; SM00438; ZnF_NFX; 10.
DR SUPFAM; SSF57850; RING/U-box; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT TRANSMEM 810..828
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 225..244
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 278..297
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 332..352
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 385..404
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 412..431
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 469..490
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 498..543
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 580..607
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 617..635
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT DOMAIN 680..702
FT /note="NF-X1-type"
FT /evidence="ECO:0000259|SMART:SM00438"
FT REGION 1..44
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 29..44
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 852 AA; 95123 MW; F15B96F93655B22E CRC64;
MTSPWNKIHI HHSHPSPSPP PPLSDSDSDD CGGDSSSSAP LRHSDLSDSI FKPYLELSGH
SGADLSKIQS FLTSSSAGAL SCLICLERIK PSDPTWSCSS LCFAVFHLFC IQSWARQASD
LAAARAATRL PISPATASAS ALWNCPKCRS EYPKSHIPKT YFCFCGKIEN PPNDPWILPH
SCGEVCGRPL KHIKVRCLCG CLEDVRRCGF KEFSCNKPCS KFLDCGVHRC IELCHPGACP
PCRTRGVHAC QCAKVKEERE CCDRVFQCGN PCEKRLGCGK HVCERGCHSG KCGECPLKGK
RTCPCGKRVY EGMPCDAPVQ LCGATCDKML PCGYHRCPER CHRGQCVETC RVVVKKSCRC
GSLKKDVPCY QDLACERKCQ RMRDCGRHAC KRRCCDGDCP PCSEICGRKL RCKNHKCPSP
CHRGPCAPCP IMVTISCACG ETRFEVPCGT EMDNKPPRCP KPCPITPLCR HASNIKPHKC
HYGACHPCRL PCAKEYQCGH TCKLRCHGAK PPPNPEFTLK PKKKKIIQQS ESVPGTPCPP
CPELVWRSCV GKHIGAERMM VCSDKSQFSC ENLCGNPVPC GNHYCTKTCH ALENQLQGSQ
PCEDCYLSCQ KEREPACPHH CPRRCHPGDC PPCKVLIKRS CHCGAMVHVF ECLYYNSLSA
KGQETVRSCG GPCHRKLPNC THLCPETCHS GQCTNAEKCC KKVTVRCKCH TLKKEWVCQD
VQAAYHLAGC HPRDIPKNQF GIGLIPCNSD CNSKVQVVES EQQLRKTRVT EVQEPDVEKS
VRKRRKRREQ VLESKETSKL QKIISRMKRL LLFVFILVIL LAATYYGYKG LLWLNDWMNE
VDERRQRYSR IK
//
