ID I1LP24_SOYBN Unreviewed; 503 AA.
AC I1LP24;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 63.
DE RecName: Full=RNA polymerase sigma-70 domain-containing protein {ECO:0000259|PROSITE:PS00715};
GN Name=100801884 {ECO:0000313|EnsemblPlants:KRH23963};
GN ORFNames=GLYMA_12G013300 {ECO:0000313|EMBL:KRH23963.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH23963.1};
RN [1] {ECO:0000313|EMBL:KRH23963.1, ECO:0000313|EnsemblPlants:KRH23963}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH23963};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH23963.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH23963}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH23963};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH23963.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH23963.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
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DR EMBL; CM000845; KRH23963.1; -; Genomic_DNA.
DR RefSeq; XP_003539986.1; XM_003539938.3.
DR AlphaFoldDB; I1LP24; -.
DR SMR; I1LP24; -.
DR STRING; 3847.I1LP24; -.
DR PaxDb; 3847-GLYMA12G01600-1; -.
DR EnsemblPlants; KRH23963; KRH23963; GLYMA_12G013300.
DR GeneID; 100801884; -.
DR Gramene; KRH23963; KRH23963; GLYMA_12G013300.
DR KEGG; gmx:100801884; -.
DR eggNOG; ENOG502QQ9I; Eukaryota.
DR HOGENOM; CLU_014793_3_4_1; -.
DR InParanoid; I1LP24; -.
DR OMA; YGLENEC; -.
DR OrthoDB; 33789at2759; -.
DR Proteomes; UP000008827; Chromosome 12.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF14; RNA POLYMERASE SIGMA FACTOR SIGA; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00715; SIGMA70_1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 288..301
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
SQ SEQUENCE 503 AA; 57065 MW; C6A15109BAB90290 CRC64;
MATAAVIGLS GGKRLLSSSY HYSDIIEKLS YGSDFGSTHY QIVPTKSLIV AKKSSNYTPT
FPASNQQNQS IKALKEHVDD APTIADPWFQ SYNSNDLEVE SSEMGYSVEA LLLLQKSMLE
KQWNLSFERE VLTENSSKGK KCRKVAVTCS GVSARQRRMN TKRKTAIKTC GAMQLKSKIS
PELLQHRLKG YVKGLVSEEL LSHAEVVNLS EKIKVGLSLE EHKSRLKEKL GCEPSDDQMA
TSLKISRTEL RARMIECSLA REKLAMSNVR LVMSIAQKYD NLGAEMGDLV QGGLIGLLRG
IEKFDSSKGF KISTYVYWWI RQGVSRALVE NSRTLRLPAH LHERLSLIRN AKFRLEERGI
TPTIDRIAKY LNMSQKKVRN ATEAISKIIS LDREAFPSLN GLQGETHHSY IADNRVENIP
WNGVDEWALK DEVNRLINVT LVEREREIIR LYYGLEKECL TWEDISKRIG LSRERVRQVG
LVALEKLKHA ARKRQMEAML LKH
//
