ID I1LUD4_SOYBN Unreviewed; 836 AA.
AC I1LUD4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 53.
DE RecName: Full=Pep3/Vps18/deep orange beta-propeller domain-containing protein {ECO:0000259|Pfam:PF05131};
GN Name=100818056 {ECO:0000313|EnsemblPlants:KRH26901};
GN ORFNames=GLYMA_12G201100 {ECO:0000313|EMBL:KRH26901.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH26901.1};
RN [1] {ECO:0000313|EMBL:KRH26901.1, ECO:0000313|EnsemblPlants:KRH26901}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH26901};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH26901.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH26901}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH26901};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH26901.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH26901.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004287};
CC Peripheral membrane protein {ECO:0000256|ARBA:ARBA00004287};
CC Cytoplasmic side {ECO:0000256|ARBA:ARBA00004287}.
CC -!- SIMILARITY: Belongs to the VPS18 family.
CC {ECO:0000256|ARBA:ARBA00010454}.
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DR EMBL; CM000845; KRH26901.1; -; Genomic_DNA.
DR AlphaFoldDB; I1LUD4; -.
DR EnsemblPlants; KRH26901; KRH26901; GLYMA_12G201100.
DR Gramene; KRH26901; KRH26901; GLYMA_12G201100.
DR HOGENOM; CLU_003488_1_0_1; -.
DR Proteomes; UP000008827; Chromosome 12.
DR ExpressionAtlas; I1LUD4; baseline and differential.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006886; P:intracellular protein transport; IEA:UniProtKB-UniRule.
DR GO; GO:0016192; P:vesicle-mediated transport; IEA:InterPro.
DR InterPro; IPR000547; Clathrin_H-chain/VPS_repeat.
DR InterPro; IPR007810; Pep3_Vps18.
DR PANTHER; PTHR23323; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN; 1.
DR PANTHER; PTHR23323:SF26; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 18 HOMOLOG; 1.
DR Pfam; PF00637; Clathrin; 1.
DR Pfam; PF05131; Pep3_Vps18; 1.
DR PROSITE; PS50236; CHCR; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 20..394
FT /note="Pep3/Vps18/deep orange beta-propeller"
FT /evidence="ECO:0000259|Pfam:PF05131"
FT COILED 776..810
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 836 AA; 95069 MW; CA897E4D6851D85C CRC64;
MDQGRQVFTV DLLERYAAKG RGVITCMAAG NDVIVIGTSR GWVVRHDFGV GNSNEIDLSV
GRPGDQSIHR VFVDPGGSHC IATVVGPGGA ETFYTHAKWT KPRILSKLKG LVVNAVAWNK
QQITEVSTKE VILGTENGQL HELAVDEKDK KEKYIKFLFE LTELQEAFMG LQMETASMIN
GTRYYVMAVT PTRLYSFTGS YLDRTVHFME LPGDIANSEL HFFIKQRRAV HFAWLSGAGM
YHGGLNFGGQ QSSSSGNENF IENKALLDYS KLSEGAEVVK PSSMALSEFH FLLLLGNKVK
VVNRISEKII EELQFDQTSD SASKGIIGLC SDATAGLFYA YDQNSIFQVS INDEGQDMWK
VYLDMNEYAA ALANCRDPFQ RDQVYLVQAE AAFSFKDYLR AASFYAKINY ILSFEEVTLK
FISIGEQDAL RTFVLRKLDN LEKSDKCQIT MISTWTTELY LDKINRLLLE DDFASENNNL
EYQSIIKEFC TFLSDNKDVL DETTTMKLLE SYGRVEELVY FASLKGQYEI VVHHYIQQGE
AKKALEVLQK PSVPIDLQYK FAPDLVALDA YETVESWMTT KNLNPRKLIP AMMRYSSEPH
AKNETHEVIK YLEYCVHRLH NENPGIHNLL LSLYAKQEDD SSLLRFLQSK FGKGPENGPE
FFYDPKYALR LCLKEKRMRA CVHIYSMMSM HEEAVALALQ IDSELAMAEA DKVEDDEDLR
KKLWLMIAKH VVEQEKGTKR ENIRKAIAFL KETDGLLKIE DILPFFPDFA LIDDFKEAIC
SSLEDYNKQI EQLKEEMNDA THGADNIRND ISALAQRCTI IDRDEECGVL PFLIYV
//
