ID I1LVC8_SOYBN Unreviewed; 1176 AA.
AC I1LVC8;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 24-JAN-2024, entry version 70.
DE RecName: Full=Structural maintenance of chromosomes protein {ECO:0000256|PIRNR:PIRNR005719};
GN Name=100780995 {ECO:0000313|EnsemblPlants:KRH27467};
GN ORFNames=GLYMA_12G236600 {ECO:0000313|EMBL:KRH27467.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH27467};
RN [1] {ECO:0000313|EMBL:KRH27467.1, ECO:0000313|EnsemblPlants:KRH27467}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH27467};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH27467.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH27467}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH27467};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH27467.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH27467.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PIRNR:PIRNR005719}.
CC -!- SIMILARITY: Belongs to the SMC family. SMC2 subfamily.
CC {ECO:0000256|ARBA:ARBA00005231}.
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DR EMBL; CM000845; KRH27467.1; -; Genomic_DNA.
DR RefSeq; XP_003540523.1; XM_003540475.3.
DR AlphaFoldDB; I1LVC8; -.
DR SMR; I1LVC8; -.
DR STRING; 3847.I1LVC8; -.
DR PaxDb; 3847-GLYMA12G36520-1; -.
DR EnsemblPlants; KRH27467; KRH27467; GLYMA_12G236600.
DR GeneID; 100780995; -.
DR Gramene; KRH27467; KRH27467; GLYMA_12G236600.
DR KEGG; gmx:100780995; -.
DR eggNOG; KOG0933; Eukaryota.
DR HOGENOM; CLU_001042_9_0_1; -.
DR InParanoid; I1LVC8; -.
DR OMA; HNKIAME; -.
DR OrthoDB; 231904at2759; -.
DR Proteomes; UP000008827; Chromosome 12.
DR ExpressionAtlas; I1LVC8; baseline and differential.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0000793; C:condensed chromosome; IBA:GO_Central.
DR GO; GO:0000796; C:condensin complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0051321; P:meiotic cell cycle; IEA:UniProtKB-KW.
DR GO; GO:0007076; P:mitotic chromosome condensation; IBA:GO_Central.
DR CDD; cd03273; ABC_SMC2_euk; 1.
DR Gene3D; 1.20.1060.20; -; 1.
DR Gene3D; 3.30.70.1620; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003395; RecF/RecN/SMC_N.
DR InterPro; IPR024704; SMC.
DR InterPro; IPR027120; Smc2_ABC.
DR InterPro; IPR010935; SMC_hinge.
DR InterPro; IPR036277; SMC_hinge_sf.
DR PANTHER; PTHR43977:SF2; STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN; 1.
DR PANTHER; PTHR43977; STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3; 1.
DR Pfam; PF06470; SMC_hinge; 1.
DR Pfam; PF02463; SMC_N; 2.
DR PIRSF; PIRSF005719; SMC; 1.
DR SMART; SM00968; SMC_hinge; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF75553; Smc hinge domain; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW DNA condensation {ECO:0000256|ARBA:ARBA00023067};
KW Meiosis {ECO:0000256|ARBA:ARBA00023254};
KW Nucleus {ECO:0000256|PIRNR:PIRNR005719};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 518..638
FT /note="SMC hinge"
FT /evidence="ECO:0000259|SMART:SM00968"
FT COILED 239..287
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 317..448
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 473..507
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 789..928
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 982..1026
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 1176 AA; 132499 MW; 9DA5547595D8A38B CRC64;
MYIKEICLEG FKSYATRTVV PGFDPFFNAI TGLNGSGKSN ILDSICFVLG ITNLQQVRAS
NLQELVYKQG QAGITKATVS VVFDNSHSSR SPLGYEGHSE ITVTRQIVVG GRNKYLINGK
LAQPSQVQNL FHSVQLNVNN PHFLIMQGRI TKVLNMKPQE ILSMLEEAAG TRMYETKKEA
ALKTLEKKQS KVDEINKLLD QEILPALEKL RKEKTQYMQW ANGNAELDRL RRFCIAYEYV
QAKRIKDNAA SEVEEVKARI AEIDDVAKIN KVEIKEMETK ITQLTAEKEA NMGGEMKSLS
EKVDALSQNL VRETSVLNNK EDTLRSEEAN KANLVKNIEE LKHSVQEKAS AVKKAEEGVA
DLKNKVDELT KSLEEHEKEY QGVLAGKSSG NEEKCLEDQL RDAKVAVGST ETELKQLKAK
ISHCEKELKE KTSQLRSKCE EANAVENELS TRKKDVGNVR MELESLSYKE GEMEDLQKER
MTEMDCVQKL KDEIRNLSAN LANVEFTYCD PVKNFDRSKV KGVVAKLIKV KDRSTMTALE
VTAAGKLYNV VVDTENTGKQ LLQNGNLRRR VTIIPLNKIQ SYSVSSRVQQ AAVRLVGKGN
AEVALSLVGY EEELRSAMEY VFGSTFVCKT IDAAKEVAFN REIHTTSVTL EGDIFQPSGL
LTGGSRKGGG DLLGQLHALS EAESKLSVHQ RRLSEIEAKI SKLLPLQKKF IDLKAQLELK
LYDLSLFQSR AEQNEHHKLG ELVKKIEQEL NEVKSTVKDK QLLYKDCVKT VSSLEKSIKD
HDNNRESRLK GLEKKIKTIK SQMQSSLKDL KGHDSEKERL VMEMEAVIQE QASLENQLAS
LGTLISNLAS EVEEQRSSVV AARDNLDQVQ SQLKSVRLKM KECDQEISAI IKEQQKLEHK
ISESNLERKR MENEVKRMEM EQKDCSVRVD KLIEKHAWIA SEKQLFGRSG TDYDFSSRDP
TKAREELEKL QAEQSGLEKR VNKKVMAMFE KAEDEYNDLM SKKNIIENDK SKIKMVIEEL
DEKKKETLNV TWIKVNNDFG SIFSMLLPGT MAKLEPPEGC SFLDGLEVRV AFGSVWKQSL
SELSGGQRSL LALSLILALL LFKPAPLYIL DEVDAALDLS HTQNIGRMIK AHFPHSQFIV
VSLKEGMFNN ANVLFRTKFV DGVSTVQRTV AAKQSK
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