ID I1LX73_SOYBN Unreviewed; 428 AA.
AC I1LX73;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN Name=100778533 {ECO:0000313|EnsemblPlants:KRH18152};
GN ORFNames=GLYMA_13G041500 {ECO:0000313|EMBL:KRH18152.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH18152.1};
RN [1] {ECO:0000313|EMBL:KRH18152.1, ECO:0000313|EnsemblPlants:KRH18152}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH18152};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH18152.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH18152}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH18152};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH18152.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH18152.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000846; KRH18152.1; -; Genomic_DNA.
DR RefSeq; XP_003541515.1; XM_003541467.3.
DR AlphaFoldDB; I1LX73; -.
DR SMR; I1LX73; -.
DR STRING; 3847.I1LX73; -.
DR PaxDb; 3847-GLYMA13G08170-1; -.
DR EnsemblPlants; KRH18152; KRH18152; GLYMA_13G041500.
DR GeneID; 100778533; -.
DR Gramene; KRH18152; KRH18152; GLYMA_13G041500.
DR KEGG; gmx:100778533; -.
DR eggNOG; KOG1190; Eukaryota.
DR HOGENOM; CLU_033500_0_0_1; -.
DR InParanoid; I1LX73; -.
DR OMA; HQYNGTQ; -.
DR OrthoDB; 4825346at2759; -.
DR Proteomes; UP000008827; Chromosome 13.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0043484; P:regulation of RNA splicing; IBA:GO_Central.
DR CDD; cd12686; RRM1_PTBPH1_PTBPH2; 1.
DR CDD; cd12691; RRM2_PTBPH1_PTBPH2; 1.
DR CDD; cd12690; RRM3_PTBPH1_PTBPH2; 1.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR021790; PTBP1-like_RRM2.
DR InterPro; IPR034792; PTBPH1/PTBPH2_RRM1.
DR InterPro; IPR034793; PTBPH1/PTBPH2_RRM2.
DR InterPro; IPR034794; PTBPH1/PTBPH2_RRM3.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR15592; MATRIN 3/NUCLEAR PROTEIN 220-RELATED; 1.
DR PANTHER; PTHR15592:SF29; POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF13893; RRM_5; 1.
DR Pfam; PF11835; RRM_8; 1.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 18..96
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 385..428
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 428 AA; 47089 MW; F0E3267FBEEC56C2 CRC64;
MASVSTQQQF RYTQPPSKVL HLRNLPWECT EDELIELGKL FGKVVNTKCN VGANRNQAFI
EFADLNQAIA MISYYASSSE PAQVRGKTVY LQYSNRQEIV NNKTAADVAG NVLLVTIEGE
DARLVSIDVL HLVFSAFGFV HKITTFEKTA GFQALVQFSD AETATSAKDA LDGRSIPRYL
LPEHIGPCGL KITYSGHSDL SVKFQSHRSR DYTNPYLPVA QSAMEGSGQP MVGLDGKRLE
AESNVLLASI ENMQYTVTLD VLHMVFSAFG PVQKIAMFDK NGGLQALIQY PDIQTAVVAK
ETLEGHCIYD GGFCKLHISY SRHTDLSIKV NNERSRDYTI PNVPPPVVNA QPSILGQHPV
PMTGPPPQHY NGAQYAPVTE QTLMSHSQAG WGTGPPQSMQ QMHNHPYTPS AMVPPQTTPG
MQFPSHIQ
//
