ID I1M4E5_SOYBN Unreviewed; 529 AA.
AC I1M4E5;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=ribonuclease P {ECO:0000256|ARBA:ARBA00012179};
DE EC=3.1.26.5 {ECO:0000256|ARBA:ARBA00012179};
GN Name=100802795 {ECO:0000313|EnsemblPlants:KRH22702};
GN ORFNames=GLYMA_13G317800 {ECO:0000313|EMBL:KRH22702.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH22702.1};
RN [1] {ECO:0000313|EMBL:KRH22702.1, ECO:0000313|EnsemblPlants:KRH22702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH22702};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH22702.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH22702}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH22702};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH22702.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH22702.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Endonucleolytic cleavage of RNA, removing 5'-extranucleotides
CC from tRNA precursor.; EC=3.1.26.5;
CC Evidence={ECO:0000256|ARBA:ARBA00000928};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM000846; KRH22702.1; -; Genomic_DNA.
DR RefSeq; XP_006594940.1; XM_006594877.2.
DR AlphaFoldDB; I1M4E5; -.
DR SMR; I1M4E5; -.
DR STRING; 3847.I1M4E5; -.
DR PaxDb; 3847-GLYMA13G39460-1; -.
DR EnsemblPlants; KRH22702; KRH22702; GLYMA_13G317800.
DR GeneID; 100802795; -.
DR Gramene; KRH22702; KRH22702; GLYMA_13G317800.
DR KEGG; gmx:100802795; -.
DR eggNOG; KOG1347; Eukaryota.
DR InParanoid; I1M4E5; -.
DR OMA; YAVETHM; -.
DR OrthoDB; 47419at2759; -.
DR Proteomes; UP000008827; Chromosome 13.
DR ExpressionAtlas; I1M4E5; baseline and differential.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0004526; F:ribonuclease P activity; IBA:GO_Central.
DR GO; GO:0001682; P:tRNA 5'-leader removal; IBA:GO_Central.
DR Gene3D; 3.40.50.11980; -; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR031595; PRORP_C.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR13547:SF13; PROTEINACEOUS RNASE P 2; 1.
DR PANTHER; PTHR13547; UNCHARACTERIZED; 1.
DR Pfam; PF17177; PPR_long; 1.
DR Pfam; PF16953; PRORP; 1.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW tRNA processing {ECO:0000256|ARBA:ARBA00022694};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 6..218
FT /note="Pentacotripeptide-repeat region of PRORP"
FT /evidence="ECO:0000259|Pfam:PF17177"
FT DOMAIN 260..486
FT /note="PRORP"
FT /evidence="ECO:0000259|Pfam:PF16953"
FT REGION 507..529
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 529 AA; 59132 MW; F9A587CE9CDE7EB4 CRC64;
MEEHPKKKKK GCRNPETKFQ FELNSCSKAK DLRGAISLYD DAVSNNTRLN QHHFNALLYL
CSNSVADPSL KPTALDYGFR AFRHMSALAV LPNEATVTAV ARLAAAKGDA DYAFELVKSM
GKNYNNALPR LRTYDPALFC FCEMLDADKA YEVEEHMNGV GVSLEEAELA ALLKVSARCG
RVDKVYEYLH RLRSSVRCVS ESTAVVIEEW FRGSKASEVG EAEFDAGRVK EGVLRNGGGW
HGQGWVGKGD WVVSRTSVVA DGHCCCCGQQ LVCVDIDDVE TEKFAGSVAA LAFEREVKAN
FSEFQAWLEK HASYEAIVDG ANIGLYQQNF ADGGFNISQL DDVVKELYNR SGKKWPLVVL
HNKRLRGLME NPSSRRLVEE WMKNGVLYTT PNGSNDDWYW LFAAVKLRCL LVTNDEMRDH
IFELIGSNFF NQWKERHQVH YTFVKGNLKL QMPPSYSLVI QESEKGYWHV PLVSGTSCES
TRCWLCITRP SGHDAVATVS NGVSSLDSQV DENSATSIAG KRKERSPPS
//
