ID I1M8J4_SOYBN Unreviewed; 425 AA.
AC I1M8J4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN Name=100819523 {ECO:0000313|EnsemblPlants:KRH15315};
GN ORFNames=GLYMA_14G080600 {ECO:0000313|EMBL:KRH15315.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH15315.1};
RN [1] {ECO:0000313|EMBL:KRH15315.1, ECO:0000313|EnsemblPlants:KRH15315}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH15315};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15315.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH15315}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH15315};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH15315.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15315.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000847; KRH15315.1; -; Genomic_DNA.
DR RefSeq; XP_003544447.1; XM_003544399.3.
DR AlphaFoldDB; I1M8J4; -.
DR SMR; I1M8J4; -.
DR STRING; 3847.I1M8J4; -.
DR PaxDb; 3847-GLYMA14G08840-1; -.
DR EnsemblPlants; KRH15315; KRH15315; GLYMA_14G080600.
DR GeneID; 100819523; -.
DR Gramene; KRH15315; KRH15315; GLYMA_14G080600.
DR KEGG; gmx:100819523; -.
DR eggNOG; KOG0118; Eukaryota.
DR HOGENOM; CLU_016304_2_1_1; -.
DR InParanoid; I1M8J4; -.
DR OMA; FRMDFGN; -.
DR OrthoDB; 129910at2759; -.
DR Proteomes; UP000008827; Chromosome 14.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR CDD; cd12344; RRM1_SECp43_like; 1.
DR CDD; cd12345; RRM2_SECp43_like; 1.
DR CDD; cd12346; RRM3_NGR1_NAM8_like; 1.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR47640:SF16; POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED; 1.
DR PANTHER; PTHR47640; TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED; 1.
DR Pfam; PF00076; RRM_1; 3.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 3.
PE 4: Predicted;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 97..177
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 190..269
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 295..367
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..29
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 57..97
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 265..299
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..18
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 74..96
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 270..299
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 425 AA; 46998 MW; 5C7A60D9ED2CAFB2 CRC64;
MQQSNGSDSS TTEQKAPPPR QSPAVARPQQ WLPMQYPAAA MVMPHHMLPP QHYAPPPYVP
FHHHHHHHQY AAPHVPNQHQ QQQQHHHHQN GSGGENKTIW IGDLHHWMDE NYLHRCFAST
GEISSIKVIR NKQTGLSEGY GFVEFYSHAT AEKVLQNYAG ILMPNTEQPF RLNWATFSTG
DKGSDNVPDL SIFVGDLAAD VTDSLLHETF ASVYPSVKAA KVVFDANTGR SKGYGFVRFG
DDNQRTQAMT QMNGVYCSSR PMRIGAATPR KSSGHQQGGQ SNGTANQSEA DSTNTTIFVG
GLDPNVSDED LRQPFSQYGE IVSVKIPVGK GCGFVQFANR NNAEEALQKL NGTSIGKQTV
RLSWGRNPAN KQFRMDFGNP WTGAYYGAPM YDGYGYALTP RHDPSIYAAA YGAYPLYGGH
QQQVS
//
