ID I1M8Y8_SOYBN Unreviewed; 344 AA.
AC I1M8Y8;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 53.
DE RecName: Full=3'-5' exonuclease domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100810098 {ECO:0000313|EnsemblPlants:KRH15490};
GN ORFNames=GLYMA_14G091700 {ECO:0000313|EMBL:KRH15490.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH15490};
RN [1] {ECO:0000313|EMBL:KRH15490.1, ECO:0000313|EnsemblPlants:KRH15490}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH15490};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15490.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH15490}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH15490};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH15490.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15490.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM000847; KRH15490.1; -; Genomic_DNA.
DR AlphaFoldDB; I1M8Y8; -.
DR EnsemblPlants; KRH15490; KRH15490; GLYMA_14G091700.
DR Gramene; KRH15490; KRH15490; GLYMA_14G091700.
DR Proteomes; UP000008827; Chromosome 14.
DR ExpressionAtlas; I1M8Y8; baseline and differential.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd06148; Egl_like_exo; 1.
DR CDD; cd00105; KH-I; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR46814:SF1; 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN _ K HOMOLOGY DOMAIN-CONTAINING PROTEIN _ KH DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46814; EGALITARIAN, ISOFORM B; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00013; KH_1; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00117}.
FT DOMAIN 38..226
FT /note="3'-5' exonuclease"
FT /evidence="ECO:0000259|SMART:SM00474"
FT DOMAIN 274..342
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT REGION 1..33
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 344 AA; 38725 MW; 024E11557BDA241F CRC64;
MASSSPSPPS YLTHLPLHPS HQGESEKRVE DDESRVPIHI VTAATQLPVE FLEPSPQSKL
VIGFDCEGVD LCRKGTLCVM QLAFPDAVYL VDAIEGGEEL IIACKPALES NYITKVIHDC
KRDSEALYFQ FGIKLNNVVD TQIAYSLIEE QEGRKRLRDD YISFVGLLAD PRYCISYDEK
EEVRVLLRQD PKFWTHRPLS EQMIRAAADD VRFLLYIYRQ MMEKLNERSL WYLAVHGALY
CRCFCLNSNN FADWPSLPSI PVDNLNADGN DLEEEILSVL DIPQGKMGLV IGKRGATILS
IKRSCNAEIL TGGPKGPPDK VFIIGPVKEV RKAEAMIRGR ILDI
//
