ID I1MD35_SOYBN Unreviewed; 639 AA.
AC I1MD35;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE RecName: Full=LsmAD domain-containing protein {ECO:0000259|SMART:SM01272};
GN Name=100782491 {ECO:0000313|EnsemblPlants:KRH10082};
GN ORFNames=GLYMA_15G027500 {ECO:0000313|EMBL:KRH10083.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH10083.1};
RN [1] {ECO:0000313|EMBL:KRH10083.1, ECO:0000313|EnsemblPlants:KRH10082}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH10082};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH10083.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH10082}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH10082};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH10083.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH10083.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000848; KRH10082.1; -; Genomic_DNA.
DR EMBL; CM000848; KRH10083.1; -; Genomic_DNA.
DR RefSeq; XP_003546785.1; XM_003546737.3.
DR AlphaFoldDB; I1MD35; -.
DR EnsemblPlants; KRH10082; KRH10082; GLYMA_15G027500.
DR EnsemblPlants; KRH10083; KRH10083; GLYMA_15G027500.
DR GeneID; 100782491; -.
DR Gramene; KRH10082; KRH10082; GLYMA_15G027500.
DR Gramene; KRH10083; KRH10083; GLYMA_15G027500.
DR KEGG; gmx:100782491; -.
DR OrthoDB; 55807at2759; -.
DR Proteomes; UP000008827; Chromosome 15.
DR ExpressionAtlas; I1MD35; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProt.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR Gene3D; 2.30.30.100; -; 1.
DR InterPro; IPR009818; Ataxin-2_C.
DR InterPro; IPR045117; ATXN2-like.
DR InterPro; IPR009604; LsmAD_domain.
DR InterPro; IPR025852; SM_dom_ATX.
DR PANTHER; PTHR12854; ATAXIN 2-RELATED; 1.
DR PANTHER; PTHR12854:SF7; ATAXIN-2 HOMOLOG; 1.
DR Pfam; PF06741; LsmAD; 1.
DR Pfam; PF07145; PAM2; 1.
DR Pfam; PF14438; SM-ATX; 1.
DR SMART; SM01272; LsmAD; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 221..292
FT /note="LsmAD"
FT /evidence="ECO:0000259|SMART:SM01272"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 333..408
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 423..555
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 15..29
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 340..408
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 443..461
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 480..535
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 639 AA; 69072 MW; E25DD524630F6A84 CRC64;
MNLQQAGQSK SSNGYGRRKS EREGATKSEN KILSGKLNAN RLANAGAVTG SKGGSYESPS
HDRLVYVTTC LIGHQVEVQV KNGSIYSGIF HATNTDKDFG IILKMACLTK DGSLRGQKSG
TEFVSKPLSK ILIIPAKDLV QVTAQDVAIT RDGLANEYHH DMHQEIMVDS LISQSRHVDL
GRELKPWVPD EDDPQCPELE NIFDGHWNRG WDQFETNEAL FGVKSTFNED LYTTKLEKGP
QTRELERQAL RIAREIEGEE TQDLHLAEER GLHLHEDFDI DEETRFSSVY RGKRVDDSGF
DEGVLFDSHN SETFGGETFG GVFGSVVKRP GEISGGKGND GAQTLANSSS VDHTLSSQSN
TGVDLSRSGS SDHAKQLASE LPAKSYSTSD GESRIQENSN SNQHGDNGIT KEENLIQAED
VQLSKSEDSQ GPLYMNKDGS DKGVLSPNAS SYAPSSHTSS KTHEKMGSHG DLVDGSASGK
ANGETKSVNS RGTQSGSDLV GSIPASSALG LSPSSSVGSL SSEKSTLNPN AKEFKLNPNA
KSFIPSPARP PTPVSDGSFY FPTNVTTVPS MPGMPMGIGI GPTFASPQPV IYNPQVAQMP
SQGYFHPNAP QYGQLLGHPR QALYMPSYMP EMQYKGRDY
//
