ID I1MJM1_SOYBN Unreviewed; 1433 AA.
AC I1MJM1;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 24-JAN-2024, entry version 70.
DE RecName: Full=Clustered mitochondria protein homolog {ECO:0000256|HAMAP-Rule:MF_03013};
GN Name=100785880 {ECO:0000313|EnsemblPlants:KRH13906};
GN ORFNames=GLYMA_15G271800 {ECO:0000313|EMBL:KRH13906.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH13906};
RN [1] {ECO:0000313|EMBL:KRH13906.1, ECO:0000313|EnsemblPlants:KRH13906}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH13906};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH13906.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH13906}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH13906};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH13906.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH13906.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: mRNA-binding protein involved in proper cytoplasmic
CC distribution of mitochondria. {ECO:0000256|HAMAP-Rule:MF_03013}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03013}.
CC -!- SIMILARITY: Belongs to the CLU family. {ECO:0000256|HAMAP-
CC Rule:MF_03013}.
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DR EMBL; CM000848; KRH13906.1; -; Genomic_DNA.
DR RefSeq; XP_003545968.1; XM_003545920.2.
DR AlphaFoldDB; I1MJM1; -.
DR SMR; I1MJM1; -.
DR STRING; 3847.I1MJM1; -.
DR PaxDb; 3847-GLYMA15G42670-1; -.
DR EnsemblPlants; KRH13906; KRH13906; GLYMA_15G271800.
DR GeneID; 100785880; -.
DR Gramene; KRH13906; KRH13906; GLYMA_15G271800.
DR KEGG; gmx:100785880; -.
DR eggNOG; KOG1839; Eukaryota.
DR HOGENOM; CLU_003256_0_0_1; -.
DR InParanoid; I1MJM1; -.
DR OMA; DREATCH; -.
DR OrthoDB; 927222at2759; -.
DR Proteomes; UP000008827; Chromosome 15.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0007005; P:mitochondrion organization; IEA:UniProtKB-UniRule.
DR GO; GO:0051640; P:organelle localization; IEA:UniProt.
DR CDD; cd15466; CLU-central; 1.
DR Gene3D; 3.30.2280.10; Hypothetical protein (hspc210); 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR HAMAP; MF_03013; CLU; 1.
DR InterPro; IPR033646; CLU-central.
DR InterPro; IPR025697; CLU_dom.
DR InterPro; IPR028275; CLU_N.
DR InterPro; IPR027523; CLU_prot.
DR InterPro; IPR007967; GSKIP_dom.
DR InterPro; IPR023231; GSKIP_dom_sf.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR12601:SF6; CLUSTERED MITOCHONDRIA PROTEIN HOMOLOG; 1.
DR PANTHER; PTHR12601; EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3; 1.
DR Pfam; PF13236; CLU; 2.
DR Pfam; PF15044; CLU_N; 1.
DR Pfam; PF12807; eIF3_p135; 1.
DR Pfam; PF05303; GSKIP_dom; 1.
DR Pfam; PF13424; TPR_12; 2.
DR SMART; SM00028; TPR; 3.
DR SUPFAM; SSF103107; Hypothetical protein c14orf129, hspc210; 1.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS51823; CLU; 1.
DR PROSITE; PS50005; TPR; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_03013};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_03013};
KW TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339}.
FT DOMAIN 356..666
FT /note="Clu"
FT /evidence="ECO:0000259|PROSITE:PS51823"
FT REPEAT 1148..1181
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REGION 1..76
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 468..514
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 894..923
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1367..1433
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 47..76
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 471..491
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 500..514
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 894..909
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1370..1384
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1433 AA; 156017 MW; 356FB1C634FAE7F4 CRC64;
MAGKSGKGRN RKGSHNASSA SEPPVHSNVP VKDNVEVTLE SAKTDAADAA GNSTVANPEV
KENETTTEGS QQKQGDLQLY PVSVKTQTGE KLELQLNPGD SVMDVRQFLL DAPETCFITC
YDLLLHTKDG STHHLEDYNE ISEVADITTG GCSLEMVPAF YDDRSIRAHV HRTRELLSLS
NLHASLSTSL ALQNEIAQNK GANSGDTLKP EVPELDGLGY MEDISGSLGN LLSSPLKDIK
CVESIVFSSF NPPPSYRRLV GDLIYLDVVT LEGNKFCITG STKMFYVNSS SANNLDPRPS
KATFEATTLV ALLQKISPKF KKAFREVLEG RAAAHPFENV QSLLPPNSWL GLYPVPDHRR
DAARAENALT LLYGNEPIGM QRDWNEELQS CREFPHTSPQ ERILRDRALY KVTSDFVDAA
INGAIGVISG CIPPINPTDP ECFHMYVHNN IFFSFAIDAD LEKLPKKRVD ANSKSWSSST
LQSSSDKDSI PLHGESQVPN GGKDDSSSSE DLNGTEITQD VSPEAQLAEN EQATYASANN
DLKGTKAYQE ADVPGLYNLA MAIIDYRGHR VVAQSVLPGI LQGDKSDSLL YGSVDNGKKI
CWNEDFHSKV SEAAKCLHLK EHLVLDGSGN LFKLAAPVEC KGIVGGDDRH YLLDLLRVTP
RDANYTGPGS RFCILRPELI TAYCQAQAAE ALKSKEKNFQ EANSLATESQ NAAEADQLVN
DSQNAADADK LDSTKEEKAE DVKELASVIA KASDGCEDIV FNPNVFTEFK LAGSPEEIAA
DEDNVRKVSQ YLTDVVLPKF IQDLCTLEVS PMDGQTLTEA LHAHGINVRY IGRVAGGTKH
LPHLWDLCNS EIVVRSAKHI IKDLLRETED HDLAPAVSHF LNCLFGSCQA PSGKVPANST
QSNTPKKEHA GQRSPGKHSK GLARWKGRAS LRKTQPLYAS ISSEALWLDI QEFAMVKYKF
ELPADARSRV KKISLIRNLC LKVGITVAAR KYDLSSATPF QTSDVLDLRP VVKHSVPACS
EAKELVETGK LQLAEGMLSE AYTLFSEAFS ILQQVTGPMH REVANCCRYL AMVLYHAGDM
AGAIMQQHKE LIINERCLGL DHPDTAHSYG NMALFYHGLN QTELALRHMS RAFLLLSLSS
GPDHPDVAAT FINVAMMYQD IGKMNTALRY LQEALKKNER LLGEEHIQTA VCYHALAIAF
NCMGAFKLSH QHEKKTYDIL VKQLGEDDSR TRDSQNWMNT FKMRELQMNA QKQKGQTLNA
ASAQKAIDIL KAHPDLMHAF QAAAIAGGSG SSGASANKSL NAAVMGEALS RGRGIDERAA
RAAAEVRKKA AARGLSVRPH GVPVQSLPPL TQLLNIINSG VTPDAVDNGN ADGAKKEAND
IPPSDSIDAK KGQTMPVQEQ EHAPVGSHSP VGLGKGLSSL DAKKQKSKPK AGA
//