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Entry: I1MJM1_SOYBN
LinkDB: I1MJM1_SOYBN
Original site: I1MJM1_SOYBN 
ID   I1MJM1_SOYBN            Unreviewed;      1433 AA.
AC   I1MJM1;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   09-JAN-2013, sequence version 2.
DT   24-JAN-2024, entry version 70.
DE   RecName: Full=Clustered mitochondria protein homolog {ECO:0000256|HAMAP-Rule:MF_03013};
GN   Name=100785880 {ECO:0000313|EnsemblPlants:KRH13906};
GN   ORFNames=GLYMA_15G271800 {ECO:0000313|EMBL:KRH13906.1};
OS   Glycine max (Soybean) (Glycine hispida).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC   Glycine subgen. Soja.
OX   NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH13906};
RN   [1] {ECO:0000313|EMBL:KRH13906.1, ECO:0000313|EnsemblPlants:KRH13906}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH13906};
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH13906.1};
RX   PubMed=20075913; DOI=10.1038/nature08670;
RA   Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA   Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA   Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA   Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA   Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA   Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA   Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA   Stacey G., Shoemaker R.C., Jackson S.A.;
RT   "Genome sequence of the palaeopolyploid soybean.";
RL   Nature 463:178-183(2010).
RN   [2] {ECO:0000313|EnsemblPlants:KRH13906}
RP   IDENTIFICATION.
RC   STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH13906};
RG   EnsemblPlants;
RL   Submitted (FEB-2018) to UniProtKB.
RN   [3] {ECO:0000313|EMBL:KRH13906.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH13906.1};
RA   Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA   Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA   Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA   Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA   Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA   Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA   Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA   Jackson S.;
RT   "WGS assembly of Glycine max.";
RL   Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: mRNA-binding protein involved in proper cytoplasmic
CC       distribution of mitochondria. {ECO:0000256|HAMAP-Rule:MF_03013}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03013}.
CC   -!- SIMILARITY: Belongs to the CLU family. {ECO:0000256|HAMAP-
CC       Rule:MF_03013}.
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DR   EMBL; CM000848; KRH13906.1; -; Genomic_DNA.
DR   RefSeq; XP_003545968.1; XM_003545920.2.
DR   AlphaFoldDB; I1MJM1; -.
DR   SMR; I1MJM1; -.
DR   STRING; 3847.I1MJM1; -.
DR   PaxDb; 3847-GLYMA15G42670-1; -.
DR   EnsemblPlants; KRH13906; KRH13906; GLYMA_15G271800.
DR   GeneID; 100785880; -.
DR   Gramene; KRH13906; KRH13906; GLYMA_15G271800.
DR   KEGG; gmx:100785880; -.
DR   eggNOG; KOG1839; Eukaryota.
DR   HOGENOM; CLU_003256_0_0_1; -.
DR   InParanoid; I1MJM1; -.
DR   OMA; DREATCH; -.
DR   OrthoDB; 927222at2759; -.
DR   Proteomes; UP000008827; Chromosome 15.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0007005; P:mitochondrion organization; IEA:UniProtKB-UniRule.
DR   GO; GO:0051640; P:organelle localization; IEA:UniProt.
DR   CDD; cd15466; CLU-central; 1.
DR   Gene3D; 3.30.2280.10; Hypothetical protein (hspc210); 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR   HAMAP; MF_03013; CLU; 1.
DR   InterPro; IPR033646; CLU-central.
DR   InterPro; IPR025697; CLU_dom.
DR   InterPro; IPR028275; CLU_N.
DR   InterPro; IPR027523; CLU_prot.
DR   InterPro; IPR007967; GSKIP_dom.
DR   InterPro; IPR023231; GSKIP_dom_sf.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR019734; TPR_repeat.
DR   PANTHER; PTHR12601:SF6; CLUSTERED MITOCHONDRIA PROTEIN HOMOLOG; 1.
DR   PANTHER; PTHR12601; EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3; 1.
DR   Pfam; PF13236; CLU; 2.
DR   Pfam; PF15044; CLU_N; 1.
DR   Pfam; PF12807; eIF3_p135; 1.
DR   Pfam; PF05303; GSKIP_dom; 1.
DR   Pfam; PF13424; TPR_12; 2.
DR   SMART; SM00028; TPR; 3.
DR   SUPFAM; SSF103107; Hypothetical protein c14orf129, hspc210; 1.
DR   SUPFAM; SSF48452; TPR-like; 2.
DR   PROSITE; PS51823; CLU; 1.
DR   PROSITE; PS50005; TPR; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_03013};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_03013};
KW   TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339}.
FT   DOMAIN          356..666
FT                   /note="Clu"
FT                   /evidence="ECO:0000259|PROSITE:PS51823"
FT   REPEAT          1148..1181
FT                   /note="TPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT   REGION          1..76
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          468..514
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          894..923
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1367..1433
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        47..76
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        471..491
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        500..514
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        894..909
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1370..1384
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1433 AA;  156017 MW;  356FB1C634FAE7F4 CRC64;
     MAGKSGKGRN RKGSHNASSA SEPPVHSNVP VKDNVEVTLE SAKTDAADAA GNSTVANPEV
     KENETTTEGS QQKQGDLQLY PVSVKTQTGE KLELQLNPGD SVMDVRQFLL DAPETCFITC
     YDLLLHTKDG STHHLEDYNE ISEVADITTG GCSLEMVPAF YDDRSIRAHV HRTRELLSLS
     NLHASLSTSL ALQNEIAQNK GANSGDTLKP EVPELDGLGY MEDISGSLGN LLSSPLKDIK
     CVESIVFSSF NPPPSYRRLV GDLIYLDVVT LEGNKFCITG STKMFYVNSS SANNLDPRPS
     KATFEATTLV ALLQKISPKF KKAFREVLEG RAAAHPFENV QSLLPPNSWL GLYPVPDHRR
     DAARAENALT LLYGNEPIGM QRDWNEELQS CREFPHTSPQ ERILRDRALY KVTSDFVDAA
     INGAIGVISG CIPPINPTDP ECFHMYVHNN IFFSFAIDAD LEKLPKKRVD ANSKSWSSST
     LQSSSDKDSI PLHGESQVPN GGKDDSSSSE DLNGTEITQD VSPEAQLAEN EQATYASANN
     DLKGTKAYQE ADVPGLYNLA MAIIDYRGHR VVAQSVLPGI LQGDKSDSLL YGSVDNGKKI
     CWNEDFHSKV SEAAKCLHLK EHLVLDGSGN LFKLAAPVEC KGIVGGDDRH YLLDLLRVTP
     RDANYTGPGS RFCILRPELI TAYCQAQAAE ALKSKEKNFQ EANSLATESQ NAAEADQLVN
     DSQNAADADK LDSTKEEKAE DVKELASVIA KASDGCEDIV FNPNVFTEFK LAGSPEEIAA
     DEDNVRKVSQ YLTDVVLPKF IQDLCTLEVS PMDGQTLTEA LHAHGINVRY IGRVAGGTKH
     LPHLWDLCNS EIVVRSAKHI IKDLLRETED HDLAPAVSHF LNCLFGSCQA PSGKVPANST
     QSNTPKKEHA GQRSPGKHSK GLARWKGRAS LRKTQPLYAS ISSEALWLDI QEFAMVKYKF
     ELPADARSRV KKISLIRNLC LKVGITVAAR KYDLSSATPF QTSDVLDLRP VVKHSVPACS
     EAKELVETGK LQLAEGMLSE AYTLFSEAFS ILQQVTGPMH REVANCCRYL AMVLYHAGDM
     AGAIMQQHKE LIINERCLGL DHPDTAHSYG NMALFYHGLN QTELALRHMS RAFLLLSLSS
     GPDHPDVAAT FINVAMMYQD IGKMNTALRY LQEALKKNER LLGEEHIQTA VCYHALAIAF
     NCMGAFKLSH QHEKKTYDIL VKQLGEDDSR TRDSQNWMNT FKMRELQMNA QKQKGQTLNA
     ASAQKAIDIL KAHPDLMHAF QAAAIAGGSG SSGASANKSL NAAVMGEALS RGRGIDERAA
     RAAAEVRKKA AARGLSVRPH GVPVQSLPPL TQLLNIINSG VTPDAVDNGN ADGAKKEAND
     IPPSDSIDAK KGQTMPVQEQ EHAPVGSHSP VGLGKGLSSL DAKKQKSKPK AGA
//
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