ID I1MP19_SOYBN Unreviewed; 373 AA.
AC I1MP19;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 69.
DE RecName: Full=Helicase ATP-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=102662794 {ECO:0000313|EnsemblPlants:KRH08609};
GN ORFNames=GLYMA_16G160900 {ECO:0000313|EMBL:KRH08609.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH08609.1};
RN [1] {ECO:0000313|EMBL:KRH08609.1, ECO:0000313|EnsemblPlants:KRH08609}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH08609};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH08609.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH08609}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH08609};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH08609.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH08609.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000849; KRH08609.1; -; Genomic_DNA.
DR RefSeq; XP_006599462.1; XM_006599399.2.
DR AlphaFoldDB; I1MP19; -.
DR SMR; I1MP19; -.
DR STRING; 3847.I1MP19; -.
DR PaxDb; 3847-GLYMA16G27680-1; -.
DR EnsemblPlants; KRH08609; KRH08609; GLYMA_16G160900.
DR GeneID; 102662794; -.
DR Gramene; KRH08609; KRH08609; GLYMA_16G160900.
DR KEGG; gmx:102662794; -.
DR eggNOG; KOG0331; Eukaryota.
DR HOGENOM; CLU_742722_0_0_1; -.
DR InParanoid; I1MP19; -.
DR OMA; FISHCAR; -.
DR OrthoDB; 1122345at2759; -.
DR Proteomes; UP000008827; Chromosome 16.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 1.10.1900.10; c-terminal domain of poly(a) binding protein; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR036053; PABP-dom.
DR InterPro; IPR002004; PABP_HYD.
DR PANTHER; PTHR47960; DEAD-BOX ATP-DEPENDENT RNA HELICASE 50; 1.
DR PANTHER; PTHR47960:SF6; HELICASE ATP-BINDING DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00658; PABP; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00517; PolyA; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF63570; PABC (PABP) domain; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51309; PABC; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 151..313
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 286..373
FT /note="PABC"
FT /evidence="ECO:0000259|PROSITE:PS51309"
FT REGION 37..63
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 373 AA; 40542 MW; 677EEC0CAAEEAF79 CRC64;
MRGRGRELLS LSFSLKHKPL AKSASPSSSF FRSSITFSTS SSSVAPPIKE PKTSTSSSKS
QRDSLIFERF KQRKLKGSPK DSKGTPQVCS TSVPLSLNAD TEMVVQKGVQ NENDPTMVVG
GFKELGVSEE LVEVMEGIGE FEPSEIQCVA IPAVLEGKSV LLSSPSEPGR TLAFLLPLIQ
LLRRDRELPG SNSKHPRAIV LCATEEKAAQ CFNAAKYIIH NVELKSVKDR PSPGNGESHA
SIGLMIGTPC EILEYIEEGS VVPAEIRYLV LDEADCILGG GLGPDIHKIL RPLQDQESKS
SVKRLQTILV ISAIAEVLGE QSPIVKHLEC DHAGNISAMS LEMEQTEVFH FTESLHALRK
KVAEAMDSLL KQQ
//
