ID I1MT07_SOYBN Unreviewed; 778 AA.
AC I1MT07;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN Name=100795074 {ECO:0000313|EnsemblPlants:KRH03024};
GN ORFNames=GLYMA_17G072100 {ECO:0000313|EMBL:KRH03024.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH03024.1};
RN [1] {ECO:0000313|EMBL:KRH03024.1, ECO:0000313|EnsemblPlants:KRH03024}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH03024};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH03024.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH03024}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH03024};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH03024.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH03024.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM000850; KRH03024.1; -; Genomic_DNA.
DR RefSeq; XP_003550682.1; XM_003550634.3.
DR AlphaFoldDB; I1MT07; -.
DR SMR; I1MT07; -.
DR STRING; 3847.I1MT07; -.
DR PaxDb; 3847-GLYMA17G07990-1; -.
DR EnsemblPlants; KRH03024; KRH03024; GLYMA_17G072100.
DR GeneID; 100795074; -.
DR Gramene; KRH03024; KRH03024; GLYMA_17G072100.
DR KEGG; gmx:100795074; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; I1MT07; -.
DR OMA; VYCRLNE; -.
DR OrthoDB; 1007287at2759; -.
DR Proteomes; UP000008827; Chromosome 17.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015:SF1695; OS06G0185800 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 4.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 168..202
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 269..303
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 370..404
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 471..505
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 686..778
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 778 AA; 86150 MW; 215AB9D821777990 CRC64;
MIRGDISRNT LLALISKACT FPHLAETHAQ LIRNGYQHDL ATVTKLTQKL FDVGATRHAR
ALFFSVPKPD IFLFNVLIKG FSFSPDASSI SFYTHLLKNT TLSPDNFTYA FAISASPDDN
LGMCLHAHAV VDGFDSNLFV ASALVDLYCK FSRVAYARKV FDKMPDRDTV LWNTMITGLV
RNCCYDDSVQ VFKDMVAQGV RLDSTTVATV LPAVAEMQEV KVGMGIQCLA LKLGFHFDDY
VLTGLISVFS KCEDVDTARL LFGMIRKPDL VSYNALISGF SCNGETECAV KYFRELLVSG
QRVSSSTMVG LIPVSSPFGH LHLACCIQGF CVKSGTILQP SVSTALTTIY SRLNEIDLAR
QLFDESSEKT VAAWNAMISG YAQSGLTEMA ISLFQEMMTT EFTPNPVTIT SILSACAQLG
ALSFGKSVHQ LIKSKNLEQN IYVSTALIDM YAKCGNISEA SQLFDLTSEK NTVTWNTMIF
GYGLHGYGDE ALKLFNEMLH LGFQPSSVTF LSVLYACSHA GLVREGDEIF HAMVNKYRIE
PLAEHYACMV DILGRAGQLE KALEFIRKMP VEPGPAVWGT LLGACMIHKD TNLARVASER
LFELDPGNVG YYVLLSNIYS VERNFPKAAS VREAVKKRNL SKTPGCTLIE VNGTPHVFVC
GDRSHSQTTS IYAKLEELTG KMREMGYQSE TVTALHDVEE EEKELMFNVH SEKLAIAFGL
ITTEPGTEIR IIKNLRVCLD CHAATKFISK ITERVIVVRD ANRFHHFKDG ICSCGDYW
//
