ID I1PXX4_ORYGL Unreviewed; 1855 AA.
AC I1PXX4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=Homeobox domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza glaberrima (African rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA05G0222200.1, ECO:0000313|Proteomes:UP000007306};
RN [1] {ECO:0000313|Proteomes:UP000007306}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 96717 {ECO:0000313|Proteomes:UP000007306};
RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L.,
RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K.,
RA Zuccolo A.;
RT "The complete genome of Oryza glaberrima.";
RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:ORGLA05G0222200.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
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DR STRING; 4538.I1PXX4; -.
DR EnsemblPlants; ORGLA05G0222200.1; ORGLA05G0222200.1; ORGLA05G0222200.
DR Gramene; ORGLA05G0222200.1; ORGLA05G0222200.1; ORGLA05G0222200.
DR eggNOG; ENOG502QQYM; Eukaryota.
DR HOGENOM; CLU_001241_0_1_1; -.
DR OMA; MSSAECR; -.
DR Proteomes; UP000007306; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR007759; Asxl_HARE-HTH.
DR InterPro; IPR018501; DDT_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR044977; RLT1-3.
DR InterPro; IPR028942; WHIM1_dom.
DR InterPro; IPR028941; WHIM2_dom.
DR PANTHER; PTHR36968; HOMEOBOX-DDT DOMAIN PROTEIN RLT2; 1.
DR PANTHER; PTHR36968:SF18; HOMEODOMAIN-LIKE TRANSCRIPTION FACTOR SUPERFAMILY PROTEIN-RELATED; 1.
DR Pfam; PF02791; DDT; 1.
DR Pfam; PF05066; HARE-HTH; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF15612; WHIM1; 1.
DR Pfam; PF15613; WSD; 1.
DR SMART; SM00571; DDT; 1.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50827; DDT; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS51913; HTH_HARE; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT DOMAIN 54..114
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DOMAIN 618..677
FT /note="DDT"
FT /evidence="ECO:0000259|PROSITE:PS50827"
FT DOMAIN 796..865
FT /note="HTH HARE-type"
FT /evidence="ECO:0000259|PROSITE:PS51913"
FT DNA_BIND 56..115
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 1..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 364..399
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 464..504
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 897..924
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 988..1019
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1113..1143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1569..1855
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 379..399
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1664..1678
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1704..1719
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1728..1742
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1782..1849
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1855 AA; 206231 MW; 6260CF5FFD6484B3 CRC64;
MDSSGDGGDE GAGAAPAGVE EESPAPASAP APAPASASAP VPAAVGGGAG ASGSSGKVKR
VMKTPYQLEV LERTYTEDPY PNETMRAELS VKLGLTDRQL QMWFCHRRLK DRKPPPKRQQ
LEEEVPVPVM APPPVLPPPL PHSELTMGTG GMYGEPLLPP SSRRGTGRPS AVPRISASEV
ARRYYEPPQV MLPPLAPMQL TRAEHRVIDS VERLIGEPLR EDGPVLGVEF DPLPPGAFGA
PIVPEQQRQP FRSYEAKMFS GHDTKHIKAS AFLPSIDPFV PSTVSGKRKS MTGSSSHLGS
RAVREYQFIP EQSSDIYERT TQSRYYDVST EASDSRMSTG SRFLHGVEKA PGYTFHGQIS
GSSHLSLHGR PPVFSSGSTD YEMDPSNINS SSVPNESQYG IPQVAGFENS VAPSDRMVYH
DDDAFRMERK RKHSEEAKIA KEVEAHEKRI RKELEKQDML NRKREEQVRR EMERNDRERR
KEEERLLREK QKEEERFQRE QRREHKRMEK YLLKQSLRAE KIRQKEELRK EKEAARQKAA
NERATARRIA REYMELMEDE RLELMELVSR SKGLPSMLSL DSDTLQQLDS FRGMLRQFPS
EIVRLKVPFS IKPWTSSEDN IGNLLMVWKF FITFADVLGI PSFTLDEFVQ SLHDYDSRLL
GELHVALLKS IIKDIEDVAR TPSVASGMTA NPGGGHPQIV EGAYDWGFNI LAWQRHLNLL
TWPEILRQFG LSAGLGPQLR KRNAENVNNH DDNEGRNGED VISILRSGSA AVNAAAKMKE
RGYGNRRRSR HRLTPGTVKF AAFHVLSLEG SQGLTILEVA EKIQKSGLRD LTTSKTPEAS
ISAALSRDSK LFERTAPSTY CVKTPYRKDP ADSEAVLAAA REKIRVFQNT ISECEEVEKD
VDDAERDEDS ECDDADDDPD GDEVNIEEKD VKASLVKAQD GGMPTAVGHI KKETNSIVNS
LTTPLIHTKS SESSSLRTLD KSVQVRTTSD LPAEISSDNH EGASDSAQDA EIDESNQGES
WVQGLAEGDY CDLSVEERLN ALVALIGVAT EGNSIRAVLE ERLEAASALK KQMWAEAQLD
KRRSREEFSS KMQYDSGMGL KTDVDQQNTL AESNLTPVHN LVKDSNGNGS LVNNELPVDQ
QSQPNACSVV HERNGVRQEF SANPENLSGQ QYVTSEKTRS QLKSYIGHKA EQLHVYRSLP
LGQDRRRNRY WQFSTSASPD DPGSGRIFFE SRDGYWRLID SIETFDALVS SLDTRGIRES
HLHSMLQSIE PTFKEAIGRK RCASIEPSAG RVLKNGTSEI ISPNHSNEFG SPCSTLSGVA
TDSAMAYSDS FRIELGRNDV EKTAISERAD LFIKWMWKEC NNHQPTCATK HGKKRCSELI
QCCDFCYQIY LAEETHCASC HKTFKSIHNI SEHSSQCEEK RRTDPNWKMQ ISDDSVPVGL
RLLKLLLATV EASVPAEALE PFWTDVYRKS WGVKLYSTSS TKEVFEMLTI LEGAIRRDFL
SSDFETTTEL LNLSTQDSAS RNTVPRSGSA DVLPWVPDTV AAVVLRLLDL DSAISYTLRQ
KVGSNKERGA GEFMKLPPRY TPAKTKQETE PMGTGFDRQE TWLTPSNGRG GRGGRGRGSR
GGSRGGRSRS RGGKVPRGIS SSPKIEFRGY SASAVSSEKA PRKYARRGRN RGRGRGLRTV
RPRQPSDIGA RSIPKPNLLG SFSMLRNAKH TTAMESPQSS GAEEWGLERR SSYVKDDEDN
SASQSEESSE ENSEPMNDEY DEPLPDYSRD NSGSSPLQMM DDGSDDNEED AEGDEDGEED
GEDYDAEQHV DEDNDDAEMG EDDVEDNDDG DGGGGGAENG DEDEDGTSYS SEYSE
//
