ID I3NA20_ICTTR Unreviewed; 364 AA.
AC I3NA20;
DT 11-JUL-2012, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 2.
DT 24-JAN-2024, entry version 61.
DE SubName: Full=LIM and cysteine rich domains 1 {ECO:0000313|Ensembl:ENSSTOP00000021217.2};
GN Name=LMCD1 {ECO:0000313|Ensembl:ENSSTOP00000021217.2};
OS Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus
OS tridecemlineatus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae;
OC Xerinae; Marmotini; Ictidomys.
OX NCBI_TaxID=43179 {ECO:0000313|Ensembl:ENSSTOP00000021217.2, ECO:0000313|Proteomes:UP000005215};
RN [1] {ECO:0000313|Proteomes:UP000005215}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RG The Broad Institute Genome Assembly & Analysis Group;
RG Computational R&D Group;
RG and Sequencing Platform;
RA Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA MacCallum I., Young S., Walker B.J., Lindblad-Toh K.;
RT "The Draft Genome of Spermophilus tridecemlineatus.";
RL Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSSTOP00000021217.2}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
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DR EMBL; AGTP01073420; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AGTP01073421; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_005333902.1; XM_005333845.2.
DR AlphaFoldDB; I3NA20; -.
DR STRING; 43179.ENSSTOP00000021217; -.
DR Ensembl; ENSSTOT00000021182.2; ENSSTOP00000021217.2; ENSSTOG00000013558.3.
DR GeneID; 101966544; -.
DR CTD; 29995; -.
DR eggNOG; KOG1704; Eukaryota.
DR GeneTree; ENSGT00940000158813; -.
DR HOGENOM; CLU_008937_1_0_1; -.
DR InParanoid; I3NA20; -.
DR OrthoDB; 370973at2759; -.
DR Proteomes; UP000005215; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:Ensembl.
DR GO; GO:0003714; F:transcription corepressor activity; IEA:Ensembl.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IEA:Ensembl.
DR GO; GO:0070886; P:positive regulation of calcineurin-NFAT signaling cascade; IEA:Ensembl.
DR GO; GO:0010611; P:regulation of cardiac muscle hypertrophy; IEA:Ensembl.
DR CDD; cd09340; LIM1_Testin_like; 1.
DR CDD; cd09829; PET_testin; 1.
DR Gene3D; 2.10.110.10; Cysteine Rich Protein; 2.
DR InterPro; IPR010442; PET_domain.
DR InterPro; IPR033724; PET_testin.
DR InterPro; IPR047120; Pk/Esn/Tes.
DR InterPro; IPR001781; Znf_LIM.
DR PANTHER; PTHR24211:SF0; LIM AND CYSTEINE-RICH DOMAINS PROTEIN 1; 1.
DR PANTHER; PTHR24211; LIM DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00412; LIM; 2.
DR Pfam; PF06297; PET; 1.
DR SMART; SM00132; LIM; 2.
DR SUPFAM; SSF57716; Glucocorticoid receptor-like (DNA-binding domain); 1.
DR PROSITE; PS00478; LIM_DOMAIN_1; 1.
DR PROSITE; PS50023; LIM_DOMAIN_2; 2.
DR PROSITE; PS51303; PET; 1.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW LIM domain {ECO:0000256|ARBA:ARBA00023038, ECO:0000256|PROSITE-
KW ProRule:PRU00125}; Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00125};
KW Reference proteome {ECO:0000313|Proteomes:UP000005215};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00125}.
FT DOMAIN 99..206
FT /note="PET"
FT /evidence="ECO:0000259|PROSITE:PS51303"
FT DOMAIN 240..305
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000259|PROSITE:PS50023"
FT DOMAIN 306..364
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000259|PROSITE:PS50023"
FT REGION 200..234
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 364 AA; 41070 MW; 6BE6753635BA9B4B CRC64;
MAKVAKNLSP RLQKMSLGQQ QAARSVTCLR CKGMCSGFEP HSWRKICKSC KCSQEDHCLS
SDLEDDRKIG RLLMDSKYSS LTARVKGGDG IRIYKRNRMI MTNPIATGKD PTFDTITYEW
APPGVTQKLG LQYMELIPKE KQPVTGTEGA YYRRRQLMHQ LPIYDQDPSR CRGLLENELK
VMEEFVKQYK SEALGVGEVA LPGQGGLPKE EGKQQEKPEG TEAAPTTNGS LGDPSKEVEY
FCELCKEAAP ADSPVVYSER AGYSKQWHPA CFVCVKCSEP LVDLIYFWKD GAPWCGRHYC
ESLRPRCSGC DEIIFSEDYQ RVEDLAWHRK HFVCEGCEQL LSGRAYIVTK GQLLCPTCSK
SKRS
//