ID I3YCG5_THIV6 Unreviewed; 1013 AA.
AC I3YCG5;
DT 05-SEP-2012, integrated into UniProtKB/TrEMBL.
DT 05-SEP-2012, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE SubName: Full=PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AFL74683.1};
GN OrderedLocusNames=Thivi_2765 {ECO:0000313|EMBL:AFL74683.1};
OS Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium
OS violascens).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC Thiocystis.
OX NCBI_TaxID=765911 {ECO:0000313|EMBL:AFL74683.1, ECO:0000313|Proteomes:UP000006062};
RN [1] {ECO:0000313|EMBL:AFL74683.1, ECO:0000313|Proteomes:UP000006062}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 17096 / DSM 198 / 6111
RC {ECO:0000313|Proteomes:UP000006062};
RG US DOE Joint Genome Institute;
RA Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R.,
RA Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Vogl K., Liu Z.,
RA Frigaard N.-U., Bryant D., Woyke T.;
RT "Complete sequence of Thiocystis violascens DSM 198.";
RL Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP003154; AFL74683.1; -; Genomic_DNA.
DR RefSeq; WP_014779117.1; NC_018012.1.
DR AlphaFoldDB; I3YCG5; -.
DR STRING; 765911.Thivi_2765; -.
DR KEGG; tvi:Thivi_2765; -.
DR eggNOG; COG2199; Bacteria.
DR eggNOG; COG2202; Bacteria.
DR eggNOG; COG2203; Bacteria.
DR eggNOG; COG3852; Bacteria.
DR eggNOG; COG5002; Bacteria.
DR HOGENOM; CLU_297336_0_0_6; -.
DR OrthoDB; 8553030at2; -.
DR Proteomes; UP000006062; Chromosome.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd06225; HAMP; 1.
DR CDD; cd00130; PAS; 3.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 6.10.340.10; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR003660; HAMP_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR001610; PAC.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR021796; Tll0287-like.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR NCBIfam; TIGR00229; sensory_box; 3.
DR PANTHER; PTHR44757:SF11; DIGUANYLATE CYCLASE DGCE-RELATED; 1.
DR PANTHER; PTHR44757; DIGUANYLATE CYCLASE DGCP; 1.
DR Pfam; PF11845; DUF3365; 1.
DR Pfam; PF13185; GAF_2; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF00672; HAMP; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF08448; PAS_4; 1.
DR Pfam; PF13426; PAS_9; 1.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00304; HAMP; 1.
DR SMART; SM00086; PAC; 3.
DR SMART; SM00091; PAS; 3.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF158472; HAMP domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50885; HAMP; 1.
DR PROSITE; PS50113; PAC; 3.
DR PROSITE; PS50112; PAS; 2.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000006062};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 235..254
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 251..303
FT /note="HAMP"
FT /evidence="ECO:0000259|PROSITE:PS50885"
FT DOMAIN 378..430
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 431..486
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 502..554
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 719..789
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 791..843
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 875..1009
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
SQ SEQUENCE 1013 AA; 114095 MW; 048602ED291F94BD CRC64;
MKSTDSQGHR LGDFIGKGLG ISRLQLKLWL GVGASLLIGL TVLQIEHYRV ARAETMETLL
AEARALRTVL TASSRVYHQS FLNHGLPLAC ETIDLLPTHA LARIAEELGK QRPDELQIQV
VGLERLDQNQ GPDDTDADAI AYFAQHPTSS ERLAQVSASD GRRFYHYAQP IWTEAYCLAC
HGDPQQVPAN IRDRYSPASG FHEGDLRGIM SLWLPIDQIE QRAFEHFTRS LRDHLVVFLL
LFIVGGTLLQ HFVIGKLRHL QNAAKALANG QYAARVTVAG NDELAELAND FNRMADSIAL
RDRQLAESEE RLRLFVGYAP VALAMFDRDM RYLAVSRRWL LDYGVADVIG RSHYEIFPEV
PDRWKDAHRR GLAGEVVQEA DDRFERRDGS VQWQHWAVRP WYRYDGPVGG IVIFTEDITD
RKQAEDALRR ANRYNRGLLE ASLDPLVVID PEGLIKDVNA ATEASTGYSR TELVGTEFAS
YFSNPERARA GYRQVFEQGQ VRDYDLELMH RDGRATPVLY NASVYRDHDG DDERVFAAAR
DVTHLKRLTD MLKARLRLID GAETRSMEEV LRASVDEAAA LTGSLIGFYH FLEPDQETLV
LQTWSTRTVR EFCQAEGAGL HYPLSAAGVW ADCVRQRRAI IQNDYAALPA RHGLPPGHAQ
VIRELVVPVF RNERIVAILG VGNKPRDYEE SDLNIVSTFA DLAWDIVERK RAQDALSESE
SGYRRIVETA HEGIWAMDER HLTTFVNPRM AALLGYDPSD MLGRPVEEFM FPEDLEMHGE
RMQARHRGEH EQYERRFCRK DGTELWTLVS AVAIQDAQQG FGGSFAMFTD LTEIKEQQRR
LEQMAHFDPL TGLPNRTLLA DRLRIALAHA RREECLLAVC YLDLDGFKPV NDTYGHAAGD
RLLIAVAGRL TQSVREGDTV ARLGGDEFVL LMGNLASRDE CEHLLTRLLA AISEPYALDA
ETSVAISASI GVTLYPFDHA DPDTLLRHAD LAMYQAKQAG RNGFRFLESD DAA
//
