ID I3YGC8_THIV6 Unreviewed; 1122 AA.
AC I3YGC8;
DT 05-SEP-2012, integrated into UniProtKB/TrEMBL.
DT 05-SEP-2012, sequence version 1.
DT 27-MAR-2024, entry version 53.
DE SubName: Full=Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AFL76046.1};
GN OrderedLocusNames=Thivi_4233 {ECO:0000313|EMBL:AFL76046.1};
OS Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium
OS violascens).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC Thiocystis.
OX NCBI_TaxID=765911 {ECO:0000313|EMBL:AFL76046.1, ECO:0000313|Proteomes:UP000006062};
RN [1] {ECO:0000313|EMBL:AFL76046.1, ECO:0000313|Proteomes:UP000006062}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 17096 / DSM 198 / 6111
RC {ECO:0000313|Proteomes:UP000006062};
RG US DOE Joint Genome Institute;
RA Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R.,
RA Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Vogl K., Liu Z.,
RA Frigaard N.-U., Bryant D., Woyke T.;
RT "Complete sequence of Thiocystis violascens DSM 198.";
RL Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP003154; AFL76046.1; -; Genomic_DNA.
DR RefSeq; WP_014780428.1; NC_018012.1.
DR AlphaFoldDB; I3YGC8; -.
DR STRING; 765911.Thivi_4233; -.
DR KEGG; tvi:Thivi_4233; -.
DR eggNOG; COG4251; Bacteria.
DR eggNOG; COG5001; Bacteria.
DR HOGENOM; CLU_009207_0_0_6; -.
DR OrthoDB; 9808408at2; -.
DR Proteomes; UP000006062; Chromosome.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01948; EAL; 1.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.20.20.450; EAL domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR001633; EAL_dom.
DR InterPro; IPR035919; EAL_sf.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR PANTHER; PTHR44757:SF11; DIGUANYLATE CYCLASE DGCE-RELATED; 1.
DR PANTHER; PTHR44757; DIGUANYLATE CYCLASE DGCP; 1.
DR Pfam; PF00563; EAL; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR SMART; SM00052; EAL; 1.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00267; GGDEF; 1.
DR SUPFAM; SSF141868; EAL domain-like; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50883; EAL; 1.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 4: Predicted;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00022543};
KW Reference proteome {ECO:0000313|Proteomes:UP000006062};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606}.
FT DOMAIN 23..66
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 295..453
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 715..846
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT DOMAIN 851..1109
FT /note="EAL"
FT /evidence="ECO:0000259|PROSITE:PS50883"
FT REGION 1101..1122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 657..684
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1107..1122
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1122 AA; 124780 MW; 574D4BF6ADD5DB63 CRC64;
MMFNDAIDIH DPRQLDNLSE EQLDRLPCGA IRVDAEGVIL FYSRSQAAIT NRTPEAVIGR
NFFSDVAPCT VVPEFYGRFR RGVLTGQLNT AFEFVFDFQM HPIQVRISMR ASHRPGEFWI
LIEPLRQLPP RNEQVAHDLI SGKFCETLAA LSAASFDFSQ CDAEPIATCG AIQPFGCLLT
IDPATLRIDA CSANTAMYLG LEPETLLGEP LTLALPDSDA ERLACLGAGE DSALFCPSFF
RAKAPVGELP LDVRVHRWRG RLLLEIEPHG EMAMDARLRG FDLAAFQRRL RGCDSATRIC
QEAVEIFRYL TGFERVVAYR FEPEDDGIVI AESLLPGAWP SILGLRYPAT DIPRQARALY
RETPLRYAPS RDHSDVPLLS KTLAPGAIDI GVAHLRAQSP IHRNYLKRFD VNGSMSLSIL
HDERLWGLII FHHRAPHPVT STTRRGLIEL SGCLSARLGL VEERERNRAS ELGMAEVNGI
VGEIDIEQPF PESFIGKEQL LCELVGADMV QIYHHGQPLF LGQDCNIPNG HIQNLLDFLR
TRPGPLWSTD CLSGEFEPAA AYPDRLAGVM AIFVDDRHDD ILLFGRRRVK YTVNWGADPA
SLPFAASDGE RPFGWSNRTF QVWKEERTHH ARPWSRVALA AGLALKNLIQ QVIVANAAHF
ERLAQSLARQ RDQLRQSREE MRHRALHDSL TGLPNRARFR EALAESIETS QRDGHYFSVA
LLDIDHFKTI NDTLGHDKGD LLLRALAERI RESLPGDGLA ARLGGDEFVL MLPQPAGEDP
LARMERMIES LRQTILIEGD SFSITCSLGL AIGGADSEPG ELLKQADLAL YRAKADGRNC
ARPFDRKLET QALKRLEIDR AVLGRSPMDA IEILLQPQIA IGASDRQRRF EVLARWRDED
GAIIMPSDFI PAAERNGLIG SVTAAVLRQS IRLLREQLER DDEGVRLGIN VSAADLEARG
FARRLLEDLH AADVPPDLIE IEITESLLLR MTPSVKTSLN ILDRGGVTLS LDDFGTGFSS
MVYLRELPIS NLKIDRGFIR GIEAPRDRNL VAGMIAMAHS IGKEVIAEGI ETPRQLELLK
ELGCDWGQGY LWSRPVPPEE ALQQKGGWTD GSGQAISGAG QM
//
