ID I4N406_9PSED Unreviewed; 342 AA.
AC I4N406;
DT 05-SEP-2012, integrated into UniProtKB/TrEMBL.
DT 05-SEP-2012, sequence version 1.
DT 24-JAN-2024, entry version 48.
DE SubName: Full=Dna-binding protein {ECO:0000313|EMBL:EIK96196.1};
GN ORFNames=PMM47T1_12928 {ECO:0000313|EMBL:EIK96196.1};
OS Pseudomonas sp. M47T1.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=1179778 {ECO:0000313|EMBL:EIK96196.1, ECO:0000313|Proteomes:UP000004339};
RN [1] {ECO:0000313|EMBL:EIK96196.1, ECO:0000313|Proteomes:UP000004339}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=M47T1 {ECO:0000313|EMBL:EIK96196.1,
RC ECO:0000313|Proteomes:UP000004339};
RX PubMed=22887683; DOI=10.1128/JB.01116-12;
RA Proenca D.N., Espirito Santo C., Grass G., Morais P.V.;
RT "Draft Genome Sequence of Pseudomonas sp. Strain M47T1, Carried by
RT Bursaphelenchus xylophilus Isolated from Pinus pinaster.";
RL J. Bacteriol. 194:4789-4790(2012).
CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000256|ARBA:ARBA00004418}.
CC -!- SIMILARITY: Belongs to the bacterial solute-binding protein 2 family.
CC {ECO:0000256|ARBA:ARBA00007639}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIK96196.1}.
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DR EMBL; AJWX01000010; EIK96196.1; -; Genomic_DNA.
DR AlphaFoldDB; I4N406; -.
DR STRING; 1179778.PMM47T1_12928; -.
DR PATRIC; fig|1179778.3.peg.2597; -.
DR eggNOG; COG1879; Bacteria.
DR Proteomes; UP000004339; Unassembled WGS sequence.
DR GO; GO:0030288; C:outer membrane-bounded periplasmic space; IEA:UniProt.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01392; HTH_LacI; 1.
DR CDD; cd06307; PBP1_sugar_binding; 1.
DR Gene3D; 3.40.50.2300; -; 2.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR000843; HTH_LacI.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR028082; Peripla_BP_I.
DR InterPro; IPR025997; SBP_2_dom.
DR PANTHER; PTHR30036:SF7; ABC TRANSPORTER PERIPLASMIC-BINDING PROTEIN YPHF; 1.
DR PANTHER; PTHR30036; D-XYLOSE-BINDING PERIPLASMIC PROTEIN; 1.
DR Pfam; PF00356; LacI; 1.
DR Pfam; PF13407; Peripla_BP_4; 1.
DR SMART; SM00354; HTH_LACI; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR PROSITE; PS50932; HTH_LACI_2; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000313|EMBL:EIK96196.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000004339}.
FT DOMAIN 9..50
FT /note="HTH lacI-type"
FT /evidence="ECO:0000259|PROSITE:PS50932"
SQ SEQUENCE 342 AA; 38110 MW; 80D5024BE6C9922E CRC64;
MMLERAKHFS IKQLATQAGV SKATVDRVLH QRGSVHYQTH RRIEQALDEL EAQEKNGLAV
GRTFHVDVVM HTPQRFSAAV QAAISAQLGS LAPFRIAPRF HLFEQIEPQA MHDQLLRCLD
AGSQGVVLKA ADEPAVNLAV KQLAAAGIPV VTLVTDLPHS ERIGYVGMDN RTAGQTAAYL
LSRWLAPLPQ EVAVVIGSEL FRGEEEREMG FRMWLRTRAE HLQVLDISGG YGVYERTFER
VTAALNQYPN LKAVYSVGGG NRAIVDAFAA LDRPLEVFIG HDVDDENRQL LAEEKIAAVI
DHNLQVDARN VFLHILQFHR LWKPEPIAPS QVQIVTPFNL PY
//
