ID I9WGS4_9SPHN Unreviewed; 446 AA.
AC I9WGS4;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE SubName: Full=Nickel-dependent hydrogenases b-type cytochrome subunit family {ECO:0000313|EMBL:EIZ79476.1};
GN ORFNames=WSK_1938 {ECO:0000313|EMBL:EIZ79476.1};
OS Novosphingobium sp. Rr 2-17.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Novosphingobium.
OX NCBI_TaxID=555793 {ECO:0000313|EMBL:EIZ79476.1, ECO:0000313|Proteomes:UP000004732};
RN [1] {ECO:0000313|EMBL:EIZ79476.1, ECO:0000313|Proteomes:UP000004732}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RR2-17 {ECO:0000313|Proteomes:UP000004732};
RX PubMed=22933764; DOI=10.1128/JB.01159-12;
RA Gan H.M., Chew T.H., Hudson A.O., Savka M.A.;
RT "Genome Sequence of Novosphingobium sp. Strain Rr 2-17, a Nopaline Crown
RT Gall-Associated Bacterium Isolated from Vitis vinifera L. Grapevine.";
RL J. Bacteriol. 194:5137-5138(2012).
CC -!- COFACTOR:
CC Name=heme b; Xref=ChEBI:CHEBI:60344;
CC Evidence={ECO:0000256|ARBA:ARBA00001970};
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
CC -!- SIMILARITY: Belongs to the cytochrome b561 family.
CC {ECO:0000256|ARBA:ARBA00037975}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIZ79476.1}.
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DR EMBL; AKFJ01000045; EIZ79476.1; -; Genomic_DNA.
DR AlphaFoldDB; I9WGS4; -.
DR PATRIC; fig|555793.3.peg.1911; -.
DR eggNOG; COG2353; Bacteria.
DR eggNOG; COG3038; Bacteria.
DR OrthoDB; 1247465at2; -.
DR Proteomes; UP000004732; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0022904; P:respiratory electron transport chain; IEA:InterPro.
DR Gene3D; 2.40.128.110; Lipid/polyisoprenoid-binding, YceI-like; 1.
DR InterPro; IPR011577; Cyt_b561_bac/Ni-Hgenase.
DR InterPro; IPR016174; Di-haem_cyt_TM.
DR InterPro; IPR007372; Lipid/polyisoprenoid-bd_YceI.
DR InterPro; IPR036761; TTHA0802/YceI-like_sf.
DR PANTHER; PTHR30529; CYTOCHROME B561; 1.
DR PANTHER; PTHR30529:SF1; CYTOCHROME B561 HOMOLOG 2; 1.
DR Pfam; PF01292; Ni_hydr_CYTB; 1.
DR Pfam; PF04264; YceI; 1.
DR SMART; SM00867; YceI; 1.
DR SUPFAM; SSF81342; Transmembrane di-heme cytochromes; 1.
DR SUPFAM; SSF101874; YceI-like; 1.
PE 3: Inferred from homology;
KW Cell membrane {ECO:0000256|ARBA:ARBA00022475};
KW Electron transport {ECO:0000256|ARBA:ARBA00022982};
KW Iron {ECO:0000256|ARBA:ARBA00023004};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000004732};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|ARBA:ARBA00022448}.
FT TRANSMEM 21..43
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 63..81
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 101..124
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 172..192
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 228..251
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 284..443
FT /note="Lipid/polyisoprenoid-binding YceI-like"
FT /evidence="ECO:0000259|SMART:SM00867"
SQ SEQUENCE 446 AA; 48333 MW; 21908108315E26FD CRC64;
MTSPVVYEKL PAEERPHRYS VVAIGLHWII ALLIIVIIPM GIWMSHAITV LGSQGAAYRM
YQLHKSIGFL ILGLGALRLL WRVRHRPPPG SPTLKGWERF LAHTTHAAFY AILLLMPLSG
WLYVSSGWAV ATDQPLNVAT SFFGWFEIPH LLPVAQADPA TRRLIAFRSM GFHWSMAVAV
IVLIALHTAA ALKHQLVDRD GTLGTMVPWL KAPNGKLRTT GRSGRSKALP TLIGIIAVVS
AAALPVAFGL VGDAGTDAKA VGPAAAGTTA PAIPASVVRA DTPQWTVSND ATLDFSGVHA
GTSFAGGFRK WQAHVYFDPK RLPDSKIVIL IDTRSVWTGD ATQEGTLAEA EWFDVAHFPN
ARFDSTGMSS LGGDRYKVDG ILRVKTQQAP VHFEASIHMT GSRAEAEGAF DLDRTKLDLG
MTSDPSAQWV SMTIPVKFRL KAARSE
//
