ID J0KIL2_9BURK Unreviewed; 740 AA.
AC J0KIL2;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE SubName: Full=PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJE51008.1};
GN ORFNames=PMI14_04339 {ECO:0000313|EMBL:EJE51008.1};
OS Acidovorax sp. CF316.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Acidovorax.
OX NCBI_TaxID=1144317 {ECO:0000313|EMBL:EJE51008.1, ECO:0000313|Proteomes:UP000004811};
RN [1] {ECO:0000313|EMBL:EJE51008.1, ECO:0000313|Proteomes:UP000004811}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CF316 {ECO:0000313|EMBL:EJE51008.1,
RC ECO:0000313|Proteomes:UP000004811};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJE51008.1}.
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DR EMBL; AKJX01000162; EJE51008.1; -; Genomic_DNA.
DR RefSeq; WP_007857197.1; NZ_AKJX01000162.1.
DR AlphaFoldDB; J0KIL2; -.
DR PATRIC; fig|1144317.3.peg.4016; -.
DR Proteomes; UP000004811; Unassembled WGS sequence.
DR CDD; cd01948; EAL; 1.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.20.20.450; EAL domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR001633; EAL_dom.
DR InterPro; IPR035919; EAL_sf.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR44757:SF11; DIGUANYLATE CYCLASE DGCE-RELATED; 1.
DR PANTHER; PTHR44757; DIGUANYLATE CYCLASE DGCP; 1.
DR Pfam; PF00563; EAL; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF13426; PAS_9; 1.
DR SMART; SM00052; EAL; 1.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF141868; EAL domain-like; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50883; EAL; 1.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50112; PAS; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000004811}.
FT DOMAIN 167..241
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 329..471
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT DOMAIN 480..734
FT /note="EAL"
FT /evidence="ECO:0000259|PROSITE:PS50883"
SQ SEQUENCE 740 AA; 80662 MW; 38275C98E6C8C224 CRC64;
MKCPPTLPTE EARLQALEDH GLGDEQSLPS LDPVVRIAAR MFGMPVSAVN MIGSDHVFFA
ASVGAGTMDM GRDVSFCAHA ITQNGVMVVP DTLQDERFHD NPLVTGPSNV RFYAGVPLLS
PEGHAMGALC VLDDRPHDDF STEDQERLRE LARMASDRLE LHRIETSSER TRPSFDEYAG
NSTTPVVWFD EQRRVVAINT AAAALHGYHP AECVGQPLDM LLAEEEHATL REGIARAVEA
ASMQDLKIPT EVCGRRKDFT HFLLGISLFI WRHNGRLRFE AVLKDLTAQR REEDDLRRQA
ASDPLTGLAN RACFYRRVQD ALLKPAPDGA AAVLMLDLDG FKDLNDTLGH AVGDSLLQEV
ARRLARLAGH TLFEAHRSRG PVAARLGGDE FALLLPGVAE AEAANQLAQR AISAIHQPIT
IAGHEVRVGA SCGVSVAPLQ AHEALELVGN ADLALSQAKT EGGGRSYVFV PALRMAAVAR
RLYGMELDRA VDKGELVLFY QPQVHLEDGS LSGAEALIRW QHPQRGLLAP AAFLPALESG
PLAASVGSWI LDEACAQAAY WRRHGAPGLR MGVNLFGVQF RVGDLVTEVM DALARHGLPP
DALELEITEN IVLDHDDVVP GMLRRLRDQG VGIAFDDFGT GYASLSLLTS YPLTRIKIDR
GFVQGMLESR REASVVRAIL DMARSFDLQT IAEGVETEAQ CERLRSERCG EAQGYLFSRP
LSVQQFGEAY SLGPLRKATA
//
