ID J1KRD4_9FLAO Unreviewed; 302 AA.
AC J1KRD4;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE SubName: Full=RNA-binding S4 domain-containing protein {ECO:0000313|EMBL:EJG00708.1};
GN ORFNames=FF52_13751 {ECO:0000313|EMBL:EJG00708.1};
OS Flavobacterium sp. F52.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Flavobacterium.
OX NCBI_TaxID=1202532 {ECO:0000313|EMBL:EJG00708.1, ECO:0000313|Proteomes:UP000002690};
RN [1] {ECO:0000313|EMBL:EJG00708.1, ECO:0000313|Proteomes:UP000002690}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=F52 {ECO:0000313|EMBL:EJG00708.1,
RC ECO:0000313|Proteomes:UP000002690};
RX PubMed=22965088; DOI=10.1128/JB.01249-12;
RA Kolton M., Green S.J., Harel Y.M., Sela N., Elad Y., Cytryn E.;
RT "Draft Genome Sequence of Flavobacterium sp. Strain F52, Isolated from the
RT Rhizosphere of Bell Pepper (Capsicum annuum L. cv. Maccabi).";
RL J. Bacteriol. 194:5462-5463(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJG00708.1}.
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DR EMBL; AKZQ01000027; EJG00708.1; -; Genomic_DNA.
DR RefSeq; WP_008466407.1; NZ_AKZQ01000027.1.
DR AlphaFoldDB; J1KRD4; -.
DR PATRIC; fig|1202532.3.peg.2822; -.
DR eggNOG; COG1187; Bacteria.
DR OrthoDB; 9807213at2; -.
DR Proteomes; UP000002690; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0120159; F:rRNA pseudouridine synthase activity; IEA:UniProt.
DR GO; GO:0000455; P:enzyme-directed rRNA pseudouridine synthesis; IEA:UniProt.
DR CDD; cd00165; S4; 1.
DR Gene3D; 3.30.70.1560; Alpha-L RNA-binding motif; 1.
DR Gene3D; 3.30.70.580; Pseudouridine synthase I, catalytic domain, N-terminal subdomain; 1.
DR Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR InterPro; IPR042092; PsdUridine_s_RsuA/RluB/E/F_cat.
DR InterPro; IPR020103; PsdUridine_synth_cat_dom_sf.
DR InterPro; IPR006145; PsdUridine_synth_RsuA/RluA.
DR InterPro; IPR002942; S4_RNA-bd.
DR InterPro; IPR036986; S4_RNA-bd_sf.
DR InterPro; IPR020094; TruA/RsuA/RluB/E/F_N.
DR PANTHER; PTHR47683; PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED; 1.
DR PANTHER; PTHR47683:SF2; S4 DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00849; PseudoU_synth_2; 1.
DR Pfam; PF01479; S4; 1.
DR SMART; SM00363; S4; 1.
DR SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR SUPFAM; SSF55120; Pseudouridine synthase; 1.
DR PROSITE; PS50889; S4; 1.
PE 4: Predicted;
KW Isomerase {ECO:0000256|ARBA:ARBA00023235};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT DOMAIN 70..132
FT /note="RNA-binding S4"
FT /evidence="ECO:0000259|SMART:SM00363"
FT REGION 1..67
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..27
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 35..67
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 302 AA; 34136 MW; A82B29F6FF53C560 CRC64;
MNNKEGNNKR GGSRPNSSRS NSNKPKPALP KRAQGPKKVK PEVKAAQEAA AEKFRKQNQP
AKRQKASDEI RLNKYISNSG ICSRRDADIY IQSGNVKVNG TVVTEMGYLV KLNDVVNFDG
VTLTPEKKEY ILLNKPKNFT TALDEGQEYR NVLELVRGST NAKIAPVGRM DKNTTGLLLF
TNDTDMIRKF TLPNQKSSKI YQVSLDKNLK FEDLEKISKG LVLDGHRVFV EEVSYIDNEP
KSEVGLKLRT ANVKVVRAIF ESFDYNVLRI DRVSFAGLTK KNLPRGNWRF LTDQEIINLK
NM
//
