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Database: UniProt
Entry: J2DN02_9SPHN
LinkDB: J2DN02_9SPHN
Original site: J2DN02_9SPHN 
ID   J2DN02_9SPHN            Unreviewed;       222 AA.
AC   J2DN02;
DT   03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2012, sequence version 1.
DT   24-JAN-2024, entry version 35.
DE   RecName: Full=Type-5 uracil-DNA glycosylase {ECO:0000256|ARBA:ARBA00023887};
GN   ORFNames=PMI04_01490 {ECO:0000313|EMBL:EJK84337.1};
OS   Sphingobium sp. AP49.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=1144307 {ECO:0000313|EMBL:EJK84337.1, ECO:0000313|Proteomes:UP000006480};
RN   [1] {ECO:0000313|EMBL:EJK84337.1, ECO:0000313|Proteomes:UP000006480}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AP49 {ECO:0000313|EMBL:EJK84337.1,
RC   ECO:0000313|Proteomes:UP000006480};
RX   PubMed=23045501; DOI=10.1128/JB.01243-12;
RA   Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA   Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT   "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT   sequences from diverse bacteria isolated from the rhizosphere and
RT   endosphere of Populus deltoides.";
RL   J. Bacteriol. 194:5991-5993(2012).
CC   -!- SIMILARITY: Belongs to the uracil-DNA glycosylase (UDG) superfamily.
CC       Type 5 (UDGb) family. {ECO:0000256|ARBA:ARBA00023779}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EJK84337.1}.
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DR   EMBL; AJVL01000027; EJK84337.1; -; Genomic_DNA.
DR   RefSeq; WP_007708385.1; NZ_CP124576.1.
DR   AlphaFoldDB; J2DN02; -.
DR   STRING; 1144307.PMI04_01490; -.
DR   PATRIC; fig|1144307.3.peg.1446; -.
DR   eggNOG; COG1573; Bacteria.
DR   OrthoDB; 9787663at2; -.
DR   Proteomes; UP000006480; Unassembled WGS sequence.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0033958; F:DNA-deoxyinosine glycosylase activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0004844; F:uracil DNA N-glycosylase activity; IEA:InterPro.
DR   GO; GO:0006284; P:base-excision repair; IEA:InterPro.
DR   CDD; cd10031; UDG-F5_TTUDGB_like; 1.
DR   Gene3D; 3.40.470.10; Uracil-DNA glycosylase-like domain; 1.
DR   InterPro; IPR044147; UdgB-like.
DR   InterPro; IPR005122; Uracil-DNA_glycosylase-like.
DR   InterPro; IPR036895; Uracil-DNA_glycosylase-like_sf.
DR   PANTHER; PTHR33693; TYPE-5 URACIL-DNA GLYCOSYLASE; 1.
DR   PANTHER; PTHR33693:SF3; TYPE-5 URACIL-DNA GLYCOSYLASE; 1.
DR   Pfam; PF03167; UDG; 1.
DR   SMART; SM00986; UDG; 1.
DR   SMART; SM00987; UreE_C; 1.
DR   SUPFAM; SSF52141; Uracil-DNA glycosylase-like; 1.
PE   3: Inferred from homology;
KW   4Fe-4S {ECO:0000256|ARBA:ARBA00022485};
KW   Iron {ECO:0000256|ARBA:ARBA00023004};
KW   Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT   DOMAIN          42..209
FT                   /note="Uracil-DNA glycosylase-like"
FT                   /evidence="ECO:0000259|SMART:SM00986"
SQ   SEQUENCE   222 AA;  24158 MW;  DDF5F4640652E260 CRC64;
     MILQSPLASS EPPRDCPLCP RLVALRAECR TEHPDWWNAP VPAFGDPMAR IGIIGLAPGK
     QGANRTGRPF TGDVAGDLFF ATLKKFGLAE GTYEARVDDG LELRDAIIIN SVRCLPPQNK
     PVPAEVHACR PFLADGVAQL PRARTFVALG EIAHQSAVKV LGGKLPKARF AHGAEHRMPD
     GRMLIDSYHC SRYNQNTNRL TAEMFEAVFA RAVELAGLTL PN
//
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