GenomeNet

Database: UniProt
Entry: J2DN17_9SPHN
LinkDB: J2DN17_9SPHN
Original site: J2DN17_9SPHN 
ID   J2DN17_9SPHN            Unreviewed;       153 AA.
AC   J2DN17;
DT   03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2012, sequence version 1.
DT   24-JAN-2024, entry version 49.
DE   RecName: Full=Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440};
GN   Name=nrdR {ECO:0000256|HAMAP-Rule:MF_00440};
GN   ORFNames=PMI04_01505 {ECO:0000313|EMBL:EJK84352.1};
OS   Sphingobium sp. AP49.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=1144307 {ECO:0000313|EMBL:EJK84352.1, ECO:0000313|Proteomes:UP000006480};
RN   [1] {ECO:0000313|EMBL:EJK84352.1, ECO:0000313|Proteomes:UP000006480}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AP49 {ECO:0000313|EMBL:EJK84352.1,
RC   ECO:0000313|Proteomes:UP000006480};
RX   PubMed=23045501; DOI=10.1128/JB.01243-12;
RA   Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA   Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT   "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT   sequences from diverse bacteria isolated from the rhizosphere and
RT   endosphere of Populus deltoides.";
RL   J. Bacteriol. 194:5991-5993(2012).
CC   -!- FUNCTION: Negatively regulates transcription of bacterial
CC       ribonucleotide reductase nrd genes and operons by binding to NrdR-
CC       boxes. {ECO:0000256|HAMAP-Rule:MF_00440}.
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000256|HAMAP-Rule:MF_00440};
CC       Note=Binds 1 zinc ion. {ECO:0000256|HAMAP-Rule:MF_00440};
CC   -!- SIMILARITY: Belongs to the NrdR family. {ECO:0000256|HAMAP-
CC       Rule:MF_00440}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EJK84352.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AJVL01000027; EJK84352.1; -; Genomic_DNA.
DR   RefSeq; WP_007708427.1; NZ_CP124576.1.
DR   AlphaFoldDB; J2DN17; -.
DR   STRING; 1144307.PMI04_01505; -.
DR   PATRIC; fig|1144307.3.peg.1460; -.
DR   eggNOG; COG1327; Bacteria.
DR   OrthoDB; 9807461at2; -.
DR   Proteomes; UP000006480; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0045892; P:negative regulation of DNA-templated transcription; IEA:UniProtKB-UniRule.
DR   HAMAP; MF_00440; NrdR; 1.
DR   InterPro; IPR005144; ATP-cone_dom.
DR   InterPro; IPR003796; RNR_NrdR-like.
DR   NCBIfam; TIGR00244; transcriptional regulator NrdR; 1.
DR   PANTHER; PTHR30455; TRANSCRIPTIONAL REPRESSOR NRDR; 1.
DR   PANTHER; PTHR30455:SF2; TRANSCRIPTIONAL REPRESSOR NRDR; 1.
DR   Pfam; PF03477; ATP-cone; 1.
DR   PROSITE; PS51161; ATP_CONE; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|HAMAP-
KW   Rule:MF_00440};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW   Rule:MF_00440}; Metal-binding {ECO:0000256|HAMAP-Rule:MF_00440};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|HAMAP-
KW   Rule:MF_00440};
KW   Repressor {ECO:0000256|ARBA:ARBA00022491, ECO:0000256|HAMAP-Rule:MF_00440};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163, ECO:0000256|HAMAP-
KW   Rule:MF_00440};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015, ECO:0000256|HAMAP-
KW   Rule:MF_00440}; Zinc {ECO:0000256|HAMAP-Rule:MF_00440};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|HAMAP-
KW   Rule:MF_00440}.
FT   DOMAIN          49..139
FT                   /note="ATP-cone"
FT                   /evidence="ECO:0000259|PROSITE:PS51161"
FT   ZN_FING         3..34
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00440"
SQ   SEQUENCE   153 AA;  17539 MW;  948D1F6E7F21187E CRC64;
     MRCPFCAHED SQVKDSRPTE DGNAIRRRRQ CEACGARFTT FERIQLRDIW VVKSEGRKEA
     FERDKLARSI GIACRKRPIE PSRIEKLISG IQRQLETSGE SEVPARSIGE MVMEGLKRLD
     SVAYIRFASV YKDFTDARDF EDFASTVKEV GSE
//
DBGET integrated database retrieval system