ID J2TQ96_9BURK Unreviewed; 591 AA.
AC J2TQ96;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 45.
DE SubName: Full=Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJL80902.1};
GN ORFNames=PMI16_04977 {ECO:0000313|EMBL:EJL80902.1};
OS Herbaspirillum sp. CF444.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Oxalobacteraceae; Herbaspirillum.
OX NCBI_TaxID=1144319 {ECO:0000313|EMBL:EJL80902.1, ECO:0000313|Proteomes:UP000007296};
RN [1] {ECO:0000313|EMBL:EJL80902.1, ECO:0000313|Proteomes:UP000007296}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CF444 {ECO:0000313|EMBL:EJL80902.1,
RC ECO:0000313|Proteomes:UP000007296};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJL80902.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AKJW01000118; EJL80902.1; -; Genomic_DNA.
DR RefSeq; WP_007884597.1; NZ_AKJW01000118.1.
DR AlphaFoldDB; J2TQ96; -.
DR STRING; 1144319.PMI16_04977; -.
DR PATRIC; fig|1144319.3.peg.5008; -.
DR eggNOG; COG2199; Bacteria.
DR eggNOG; COG5000; Bacteria.
DR OrthoDB; 9813903at2; -.
DR Proteomes; UP000007296; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
DR GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd06225; HAMP; 1.
DR CDD; cd18774; PDC2_HK_sensor; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 6.10.340.10; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR033479; dCache_1.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR003660; HAMP_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR PANTHER; PTHR46663; DIGUANYLATE CYCLASE DGCT-RELATED; 1.
DR PANTHER; PTHR46663:SF3; DIGUANYLATE CYCLASE DGCT-RELATED; 1.
DR Pfam; PF02743; dCache_1; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF00672; HAMP; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00304; HAMP; 1.
DR SUPFAM; SSF158472; HAMP domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50885; HAMP; 1.
PE 4: Predicted;
KW Cell membrane {ECO:0000256|ARBA:ARBA00022475};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 12..37
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 348..372
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 369..421
FT /note="HAMP"
FT /evidence="ECO:0000259|PROSITE:PS50885"
FT DOMAIN 450..591
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
SQ SEQUENCE 591 AA; 65592 MW; 62B066C0DBE408EF CRC64;
MIHILRSSSS LAKVLILPFV VLILVLSLLV GLLSYFAGRH AIVSVAEQML DQTADRVALT
VQRHIDGATS VLESAFPRGL PAGPDINVDL DAIRARFWSA TSMHPDLNNY VFYGNRSGDF
VGLFRYGVDD AELRVKRAAV DYRSAYRFDS INGQLSMPKN DETKFDPRLR PWYAAGQNSD
RDAWSEIYIN YWDKDLVATR ARRVLAANGQ FEGVIATDVS LKALNDFIHD LHVSPRGIAF
IMESNGNLIA SSDGENIFTD QQGQLGRLRA EASKNSTIRN AYATLQTHLA QEENLGGTDN
TFTFQGADGE VIYAAYSWVR DNAGLSWVTV VAVPRGDFLD TLDKNARWTV VIAVFAVAIA
LLLGLSVVHW VVRDVRRLSR AAARIGKGQM NVALKIERRD EIGQLAQSFM EMQSELSTDK
LTGVTSRAAL LRYLDAAVHK RGRRAAELFE HFTVMFIDLN RFKAINDKLG HEYGDLTLIE
VGQRLRTIMR EDDVVARFGG DEFVLVFWGI AETDFADKVR KKIEDALAPP LLCLEEVEGA
DGMTVGASIG VSFYPQDGKD AETLIKLADH GMYEDKAAGR KNEKDGGRGH R
//
