ID J3AQ78_9SPHN Unreviewed; 930 AA.
AC J3AQ78;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 49.
DE SubName: Full=PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJL35074.1};
GN ORFNames=PMI02_00448 {ECO:0000313|EMBL:EJL35074.1};
OS Novosphingobium sp. AP12.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Novosphingobium.
OX NCBI_TaxID=1144305 {ECO:0000313|EMBL:EJL35074.1, ECO:0000313|Proteomes:UP000007515};
RN [1] {ECO:0000313|EMBL:EJL35074.1, ECO:0000313|Proteomes:UP000007515}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AP12 {ECO:0000313|EMBL:EJL35074.1,
RC ECO:0000313|Proteomes:UP000007515};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJL35074.1}.
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DR EMBL; AKKE01000009; EJL35074.1; -; Genomic_DNA.
DR RefSeq; WP_007677943.1; NZ_AKKE01000009.1.
DR AlphaFoldDB; J3AQ78; -.
DR STRING; 1144305.PMI02_00448; -.
DR PATRIC; fig|1144305.3.peg.401; -.
DR eggNOG; COG5001; Bacteria.
DR OrthoDB; 9814202at2; -.
DR Proteomes; UP000007515; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01948; EAL; 1.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.20.20.450; EAL domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR001633; EAL_dom.
DR InterPro; IPR035919; EAL_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR005330; MHYT_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR44757:SF11; DIGUANYLATE CYCLASE DGCE-RELATED; 1.
DR PANTHER; PTHR44757; DIGUANYLATE CYCLASE DGCP; 1.
DR Pfam; PF00563; EAL; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF03707; MHYT; 2.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF12860; PAS_7; 1.
DR SMART; SM00052; EAL; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF141868; EAL domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50883; EAL; 1.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50924; MHYT; 1.
DR PROSITE; PS50113; PAC; 1.
DR PROSITE; PS50112; PAS; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|PROSITE-ProRule:PRU00244};
KW Reference proteome {ECO:0000313|Proteomes:UP000007515};
KW Transmembrane {ECO:0000256|PROSITE-ProRule:PRU00244};
KW Transmembrane helix {ECO:0000256|PROSITE-ProRule:PRU00244}.
FT TRANSMEM 15..35
FT /note="Helical"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00244"
FT TRANSMEM 47..68
FT /note="Helical"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00244"
FT TRANSMEM 80..100
FT /note="Helical"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00244"
FT TRANSMEM 112..134
FT /note="Helical"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00244"
FT TRANSMEM 146..166
FT /note="Helical"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00244"
FT TRANSMEM 173..196
FT /note="Helical"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00244"
FT TRANSMEM 216..238
FT /note="Helical"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00244"
FT DOMAIN 12..199
FT /note="MHYT"
FT /evidence="ECO:0000259|PROSITE:PS50924"
FT DOMAIN 248..293
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 323..375
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 537..669
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT DOMAIN 678..928
FT /note="EAL"
FT /evidence="ECO:0000259|PROSITE:PS50883"
SQ SEQUENCE 930 AA; 101144 MW; 91DD92CAEFDF4743 CRC64;
MFDVLLCIHD QHDEWLVLLA ALICVISTMS SVQLLRHARY LAGYAAARWI CGAGVAIGFG
IWATHFVAML GYDPGVIAGF QIPATIISLM TAIAMTTMSF STALAKPDRK GLALASVLGG
GGIVAMHYIG MSALEIPADI HWNQGYVTLS LLFAVLPTGP ALALAVRGRS VRSGVAAGLL
MTLSIVLLHF TAMTAVRLVP APLDLRTGIL MSPGSMAAAI AAGALGLLAI CIAVLAMARK
ARLVLHATER DMTILVKGIT DCAIYMLDRD GNVANWNAGA ERLKGYTATE AIGLPLAGFY
TSHDRTEGLP ERALALAAQT GKFSGEGFRV RRDGSRFWAH VSIEKIADEN GDHIGFAKIT
RDMSRFKEDE DRLKAMAGHL DAALGNMHQG LCLFGPDERL LVVNGRFKEI WGLDREASLI
DMTLEDVARL VLETRAHAQV SQARIDELHL LLAKPPADPT SSPVVLDLGD DLVVSMTGRA
MADGGWVTTF EDITERRRSD ARIAHMAMHD ALTGLPNRSS FAHWIDAELE QARHFGHQLA
AVMIDLDRFK EINDTRGHGA GDAALQHLSK RLLDVMAEGE VVARLGGDEF AAAKRFKDKA
ELANFLDRLD ACFARPFGPE DNCFLLDASI GLAVFPNDAQ QREQLLNNAD LAMYRAKANV
GERIAYYEPE MDETARARRQ LSNDLRQAID RNELTVLYQP QHGLATGELN GYEALLRWQH
PTRGPVAPDE FIPIAEETGE IFRIGEWVLR EACKEARTWP DGLKVAVNLS AIQLGQTEIV
EIVRGILVET GLSPMRLELE ITETAIIGDK LRALHLLRQI KSLGVSIAID DFGTGYSSLD
TLHSFPFDKI KIDKSFLLRS QSSAQARAII KAVLALGQSL NVPVLAEGVE TVDQLDLLKE
QGCDEAQGYY FGRPGLSPSL AAAEAVRQIA
//