ID J3HLE8_9BURK Unreviewed; 326 AA.
AC J3HLE8;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE SubName: Full=Transcriptional regulator with sigma factor-related N-terminal domain containing protein {ECO:0000313|EMBL:EJM99185.1};
GN ORFNames=PMI40_03745 {ECO:0000313|EMBL:EJM99185.1};
OS Herbaspirillum sp. YR522.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Oxalobacteraceae; Herbaspirillum.
OX NCBI_TaxID=1144342 {ECO:0000313|EMBL:EJM99185.1, ECO:0000313|Proteomes:UP000007507};
RN [1] {ECO:0000313|EMBL:EJM99185.1, ECO:0000313|Proteomes:UP000007507}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=YR522 {ECO:0000313|EMBL:EJM99185.1,
RC ECO:0000313|Proteomes:UP000007507};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- SIMILARITY: Belongs to the SorC transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00010466}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJM99185.1}.
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DR EMBL; AKJA01000125; EJM99185.1; -; Genomic_DNA.
DR RefSeq; WP_008118003.1; NZ_AKJA01000125.1.
DR AlphaFoldDB; J3HLE8; -.
DR STRING; 1144342.PMI40_03745; -.
DR PATRIC; fig|1144342.3.peg.3474; -.
DR eggNOG; COG2390; Bacteria.
DR OrthoDB; 9808171at2; -.
DR Proteomes; UP000007507; Unassembled WGS sequence.
DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 3.40.50.1360; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR037171; NagB/RpiA_transferase-like.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR007324; Sugar-bd_dom_put.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR34294:SF1; SORBITOL OPERON REGULATOR; 1.
DR PANTHER; PTHR34294; TRANSCRIPTIONAL REGULATOR-RELATED; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR Pfam; PF04198; Sugar-bind; 1.
DR SUPFAM; SSF100950; NagB/RpiA/CoA transferase-like; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000007507}.
FT DOMAIN 18..51
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
FT DOMAIN 65..317
FT /note="Sugar-binding"
FT /evidence="ECO:0000259|Pfam:PF04198"
SQ SEQUENCE 326 AA; 35236 MW; 251971333A8B3182 CRC64;
MANGDRQETA YMAVRVARLY YFQNMTTAAI ADEIGTSRAT VSRLLSYALD RGLVEIRVND
PQEVSGNLES AIAGRYRLRS IQVVPVPANA TEKQNLQRVA AHAAAYVSSL VTPSTVIGLA
WGTTLAEIAD KLLPRRVHDV DVVQLNGSGT GLNFVDTFGE SIVSRFAQNY GARAHHFPVP
AFFDFADTRT ALWREKSIKS IRALQDRASI VLFSIGAEAT GSHVHTGGYL GEEERDMIRQ
QGLVGDIATV FFRQDGSWRD VALNARSSGP DLDCLQRAAH SICVVSGAGK IPGLRAALEG
GFINELVIDE PSARLLVAQL QGQASP
//
