ID J3LHH9_ORYBR Unreviewed; 633 AA.
AC J3LHH9;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 62.
DE RecName: Full=RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089};
GN Name=102702351 {ECO:0000313|EnsemblPlants:OB02G40960.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB02G40960.1};
RN [1] {ECO:0000313|EnsemblPlants:OB02G40960.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB02G40960.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB02G40960.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
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DR RefSeq; XP_006647974.1; XM_006647911.2.
DR AlphaFoldDB; J3LHH9; -.
DR STRING; 4533.J3LHH9; -.
DR EnsemblPlants; OB02G40960.1; OB02G40960.1; OB02G40960.
DR GeneID; 102702351; -.
DR Gramene; OB02G40960.1; OB02G40960.1; OB02G40960.
DR KEGG; obr:102702351; -.
DR eggNOG; KOG0297; Eukaryota.
DR HOGENOM; CLU_006994_2_1_1; -.
DR OMA; FNELQDC; -.
DR OrthoDB; 21736at2759; -.
DR Proteomes; UP000006038; Chromosome 2.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IEA:InterPro.
DR CDD; cd16504; RING-HC_COP1; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR042755; COP1.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR44080; E3 UBIQUITIN-PROTEIN LIGASE COP1; 1.
DR PANTHER; PTHR44080:SF1; E3 UBIQUITIN-PROTEIN LIGASE COP1; 1.
DR Pfam; PF00400; WD40; 4.
DR Pfam; PF13923; zf-C3HC4_2; 1.
DR SMART; SM00184; RING; 1.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}; Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 8..45
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REPEAT 417..449
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 503..543
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 633 AA; 71880 MW; 378CB464C7397B8F CRC64;
MADRDLLCPI CMAVIKDAFL TSCGHSFCYM CIVTHLSHKS DCPCCGNYLT KAQLYPNFLL
DKVLKKMSAR QIAKTASPVD QFRYALQQGN DMAIKELDSL MTLIAEKKRH MEQQESETNM
QILLVFLHCL RKQKLEELNE IQTDLQYIKE DISAVERHRL ELYRTKERYS MKLRMLLDDP
AASKMWPSPM DKPSSFFPPN SRGPLSTSNP GVLQNKKLEL KGQMSHQGFQ RRDVLTCSDP
PSAPIQSGNV IARKRRVQAQ FNELQEYYLQ RRRTGAQSRR LEERDIVTMN KEGYHAGLED
FQSVLTTFTR YSRLRVIAEL RHGDLFHSAN IVSSIEFDRD DELFATAGVS KRIKVFEFST
VVNEPSDVHC PVVEMATRSK LSCLSWNKYS KNVIASSDYE GIVTVWDVQT RQSVMEYEEH
EKRAWSVDFS RTEPSMLVSG SDDCKVKVWC TKQEASAINI DMKANICSVK YNPGSSHYVA
VGSADHHIHY FDLRNPSTPV HVFGGHKKAV SYVKFLSTNE LASASTDSTL RLWDVKENCP
VRTFRGHKNE KNFVGLSVNN EYIACGSETN EVFVYHKAIS KPAANHRFVA SDLDDADDDP
GSYFISAVCW KSDSPTMLTA NSQGTIKVLV LAP
//
