ID J3LSD0_ORYBR Unreviewed; 1230 AA.
AC J3LSD0;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE RecName: Full=Pre-mRNA polyadenylation factor Fip1 domain-containing protein {ECO:0000259|Pfam:PF05182};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G39560.1};
RN [1] {ECO:0000313|EnsemblPlants:OB03G39560.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G39560.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB03G39560.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the FIP1 family.
CC {ECO:0000256|ARBA:ARBA00007459}.
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DR AlphaFoldDB; J3LSD0; -.
DR STRING; 4533.J3LSD0; -.
DR EnsemblPlants; OB03G39560.1; OB03G39560.1; OB03G39560.
DR Gramene; OB03G39560.1; OB03G39560.1; OB03G39560.
DR eggNOG; KOG1049; Eukaryota.
DR HOGENOM; CLU_006491_1_0_1; -.
DR OMA; MEDRDDI; -.
DR Proteomes; UP000006038; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR InterPro; IPR007854; Fip1_dom.
DR InterPro; IPR044976; FIPS5-like.
DR PANTHER; PTHR36884; FIP1[III]-LIKE PROTEIN; 1.
DR PANTHER; PTHR36884:SF1; FIP1[III]-LIKE PROTEIN-RELATED; 1.
DR Pfam; PF05182; Fip1; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038}.
FT DOMAIN 259..302
FT /note="Pre-mRNA polyadenylation factor Fip1"
FT /evidence="ECO:0000259|Pfam:PF05182"
FT REGION 1..227
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 341..770
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 796..1230
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 89..103
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 471..527
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 528..542
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 597..611
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 639..770
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 796..988
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1003..1052
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1053..1069
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1076..1110
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1113..1127
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1143..1157
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1158..1198
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1213..1230
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1230 AA; 136986 MW; E5250E939C52277D CRC64;
MGGGDPVVGV DPTGDWADEE DGGGRAAPPK REAAAKPPPS AEEADPLMGG VAGDSGAAIP
GLSSSGAAGT AAAGSEEWDS DSEDDIQIVL NETDGHRRLG EDEGDDEDGE DLVIVADGPI
PGMEEQDWGE DAAAAGPDGE RKEGGEPGKA VAPPSGRIGY SGGGQGFHPQ HHSMFKYVRP
GATPGAPLGG APNTTGQFRP PGPSGPFPGR GRGDWRPGSG RGMNKGFHPG YGMPPWGGSG
RGFGGGLDFT LPPHKTIFDI DVDTTFEEKP WKHPGADISD FFNFGLDDEK WKDYCKQLDQ
LRLESTMQSR IRVYESGRSE QEYDPDLPPE LAAATGHHDI SADNRNKTEN GHTDFSAQGR
APTSLRPPVM TGRPIQVETG FGERLPSIDT RLPRMRESDS VIEIVCQGQS DDPIDESDQT
EKDSQGGYKR AHGTEGGRPY TSEMNSSHSS ALGKEEHKSR LPVSSEGDML ATDVNGRSSP
SYNRTRGSPH RVGSSKGNSW GLSSAQEIET SNEVLPRQTT SSKRNRDSQG ENNPEEGSES
KDGPEGSPTA ADEAADKLST EQFDGNDGSL ALVDSAEVDG DDAISDPHGV SEITDGDNLV
HSDKKRKLIS RAEQPTGPNS NEQDELRTRN SDNSRGRSGS SKDNQKRLES GEEVLQDRRS
RRVNDVRRYH DGEERNSHRK DEYIRDAKQD VEKSHLASRS REDTHHPYAN RDRDIRGRSY
DRVRETEVWQ RREDSVHNRR AKEEDVRLEH SAEVGARNRN KMRPIDRNDR DDDLHARKRL
DDGDWRGSRQ RERGDVVLNR REHIDDSHMK RKKDEENMRR MKPENEDIVH GQHGYRARDD
PNRRKRERDD GIDQKRRDDN GRMREKADDR YHTKHKEDNW RQREREDRHR PKHENTVTLQ
RDEGRGSGRG GRILDDKLAS GSKKQDESRS SGLSKETQDR SRQNEPLRRD QGAEENNIQN
RGRADVHPRD DNPNNSERNT RQDKLNNTHD NNRLSSSSGA RQASRDRYRE STRKGRNSDI
NEQDLPKSSK RRREDHESHR GGKVDVKGVS EQDNSTDHAV SSKKGQNPQR DAFAKQVEDL
MSDDENNEDS RRGRSKLERW TSHKEIDYSS IDNENAPAFS SIKSDVQAPT ADELGKSEMA
AVAVNSENKS SGDTGQTSDK TTEERDRHLD TVERLKRRSE RFKLPMPGEK DAPHSKKADT
EAQPPQIESV AADLEVKPER PARKRRWTGS
//
