ID J3LSQ6_ORYBR Unreviewed; 2167 AA.
AC J3LSQ6;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 60.
DE RecName: Full=RNA helicase {ECO:0008006|Google:ProtNLM};
GN Name=102710578 {ECO:0000313|EnsemblPlants:OB03G40820.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G40820.1};
RN [1] {ECO:0000313|EnsemblPlants:OB03G40820.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G40820.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB03G40820.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
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DR RefSeq; XP_015690737.1; XM_015835251.1.
DR STRING; 4533.J3LSQ6; -.
DR EnsemblPlants; OB03G40820.1; OB03G40820.1; OB03G40820.
DR GeneID; 102710578; -.
DR Gramene; OB03G40820.1; OB03G40820.1; OB03G40820.
DR KEGG; obr:102710578; -.
DR eggNOG; KOG0951; Eukaryota.
DR HOGENOM; CLU_000335_1_0_1; -.
DR OMA; ITQHAKH; -.
DR OrthoDB; 57056at2759; -.
DR Proteomes; UP000006038; Chromosome 3.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProt.
DR CDD; cd18021; DEXHc_Brr2_2; 1.
DR CDD; cd18795; SF2_C_Ski2; 2.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 2.
DR Gene3D; 2.60.40.150; C2 domain; 2.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 4.
DR Gene3D; 1.10.3380.10; Sec63 N-terminal domain-like domain; 2.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041094; Brr2_helicase_PWI.
DR InterPro; IPR048863; BRR2_plug.
DR InterPro; IPR035892; C2_domain_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR014756; Ig_E-set.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR004179; Sec63-dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR47961; DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED; 1.
DR PANTHER; PTHR47961:SF4; U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE; 1.
DR Pfam; PF21188; BRR2_plug; 1.
DR Pfam; PF00270; DEAD; 2.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF18149; Helicase_PWI; 1.
DR Pfam; PF02889; Sec63; 2.
DR PIRSF; PIRSF039073; BRR2; 1.
DR SMART; SM00382; AAA; 2.
DR SMART; SM00487; DEXDc; 2.
DR SMART; SM00490; HELICc; 2.
DR SMART; SM00973; Sec63; 2.
DR SUPFAM; SSF81296; E set domains; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 3.
DR SUPFAM; SSF158702; Sec63 N-terminal domain-like; 2.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 2.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038}.
FT DOMAIN 515..697
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 731..928
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT DOMAIN 1359..1535
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT REGION 25..98
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 70..98
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 2167 AA; 245248 MW; D5F3A01C9AAB1B0F CRC64;
MAGPSGGAEA HARWRKYDYG DNSDLVLGLG SRPRGGGGEP TGELETLRGR IDPGSFGDRA
VQAKPPGGNS RRRKPRDSAD IDDVRPADAK RRRRAAQREA SVLSLTGDVV YKPRTKETRA
AYEALLSVIQ QRLGGQPLDV LASAADEVLA VLSNDKIKSR DKKEEIDKLL DPISNQMFHQ
LISIGKLITD FHDTAAAGDS AHPLDEDIGV SVDFEDNEDD EESDYDQVQD FDEDDYDDMS
KLYSASAMQM DGELDDDDDK QNSNEGLTID VHDIDAYWLQ RKVSQTYTYI DSQRSRELAE
QILSIISEGD DQDVESRLLM LLDCEKFDFI KLLLLNRLKI VWCTRLARAE DQEQREKIEE
DMLSNPTLTP ILEQLHATRV SAKDRLKNME RSFRDEAQRL TGNGNASSID GPKDHQAVEW
DMESEWLKGQ RQLLDLESLS FHQGGLLMAN EKCELPPGSF RTPHEGYEEV HVPAPKAKPY
KAGEKIVKIS DMPEWAQPAF AGMTQLNRVQ SKVYDTALFK PNNILLCAPT GSGKTNVAVL
TILQQIGLHM KDGEFDNTKY KIVYVAPMKA LVAEVVGNLS TRLKEYNVTV RELSGDRNLT
KQQIDETQII VTTPEKWDIV TRKSGERIYT QTVKLLIIDE IHLLHDNRGP VLESIVSRTM
RQIETTKEHV RLVGLSATLP NYEDVAVFLH VRSGGLFHFD NSYRPCPLAQ QYIGITVRKP
LQRFQLMNRI CYEKVMAAAG KHQVIIFVHS RKETAKTARA IRDTAFANGT LTRFLKDESA
SQDILGVQAD LVKSSDLKDL LPYGFGIHHA GLARADRELI EGLFANKHLQ VLVSTATLAW
GVNLPAHTVI IKGTQIYNPE KGAWTELSPL DVMQMLGRAG RPQYDTHGQG IILTGHSELK
YYLSLMNQQL PIESQFISRL ADQLNAEIVL GTIQNVQEAC SWLGYTYLYI RMLRNPTLYG
LPADVMETDK ALYERRVDLV HSAANLLDRN DLIKYDRKTR YFQVTDLGRI ASYYYVTHRT
ISTYNECLKP TIGHIELCQL LSLSEEFKYV SVRQDEKIEL AKLINCVPIP VKDNLEEPSA
KINVLLQVYI SRLKLEGLSL SSDMVYIRQN AGRLARALFE IVLKRGWAQP AEKALNLCKM
IDKQMWNIQI PLHQFPGIPK EILMNLEKKA LSWERYYDLS SQEIGELIRY PKLGRQLHNC
IHQLPKLTLS AHVQPITHTV LCFELTIIAD FQWDDKVHGY VEPFWLIVED NGGENILHHE
YFMLKKQYVD EDHTLNFTVP ICVPLPPQYF IRVVSDKWLG SETILPVSFK HLTLPEKYAP
PTELLDLQPL PVTALRNARY ESLYSTFKHF NPIQTQVFTA LYNGDDSVLV AAPSGSGKTI
CAEFAILRNH QEASGESNMR VVYVAPIEAI AKQRYKDWES KFGELARVVE LTGETEADLK
LLDKGEIIIS TTEKWDALSR RWKQRKQVQQ VSLFIVDEVH LIGSKNGHIL EIIISRMRRI
ANHIGSNIRV VALSASLANA KDLGEWIGTT SHSLFNFSPA VRPVPLEIHI QGCDVANFEA
RMQAMSKPTY TTITQHAKHG KPALVFVPTH KHARLTALDL CAYSSAERCG TPFLLGSEEE
MDTFTSSVND ETLKCTLKCG VGYLHEGLSD LDQELVTQLF LGGRIQVCVT SSTMCWGRSL
PSHLVVVMGT QYYDGRGKGN TDYPITDLLQ MMGYANRPLE DNYGICVILC YAPRKEYYRK
FLFEAFPVES NLHHFLHDHM NAEVVAGLIE NKQDAVDYLT WTFMYRRLTK NPNYYNLQGV
SQRHISENLS ELAETMLNDL ESTNCLAIED NMYLKTLNLG LIASYYYVSY TTIERFSSML
TQKTKMKGLL EILASASEYA GFPSCYGEKE SIEWLVSHQR FSIEKAQYDD PHVRANKLLE
CHFSRRTVEG GLAADQREIL LTAPRLLRAM VDVVSSNGWL TTALDAMELS QMVIQGMWDR
DSVLLQLPHF TKELVRRCQE NEGKAIESIF DLAEMSMPEM QDLLQLPNSQ LQDIIEFVKN
FPNIDMAFEV HEADDIRAGD NVTVQVTLER ERTNLQPGAG VGPVHAPRFP KPKAEGWWLV
IGDSSTDQLL AIKRVALQKK RARVKLQFTA PAEAGRKDYR VYLMSDSYLG CDQEYELNID
VKDAGGN
//
