ID J3LTC4_ORYBR Unreviewed; 1144 AA.
AC J3LTC4;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=SWIM-type domain-containing protein {ECO:0000259|PROSITE:PS50966};
GN Name=102708790 {ECO:0000313|EnsemblPlants:OB03G43000.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G43000.1};
RN [1] {ECO:0000313|EnsemblPlants:OB03G43000.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G43000.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB03G43000.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SIMILARITY: Belongs to the FHY3/FAR1 family.
CC {ECO:0000256|ARBA:ARBA00005889}.
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DR RefSeq; XP_015690835.1; XM_015835349.1.
DR AlphaFoldDB; J3LTC4; -.
DR STRING; 4533.J3LTC4; -.
DR EnsemblPlants; OB03G43000.1; OB03G43000.1; OB03G43000.
DR GeneID; 102708790; -.
DR Gramene; OB03G43000.1; OB03G43000.1; OB03G43000.
DR KEGG; obr:102708790; -.
DR eggNOG; ENOG502QSMI; Eukaryota.
DR HOGENOM; CLU_008459_2_0_1; -.
DR OMA; MIDQSTA; -.
DR OrthoDB; 534090at2759; -.
DR Proteomes; UP000006038; Chromosome 3.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR InterPro; IPR004330; FAR1_DNA_bnd_dom.
DR InterPro; IPR031052; FHY3/FAR1.
DR InterPro; IPR018289; MULE_transposase_dom.
DR InterPro; IPR006564; Znf_PMZ.
DR InterPro; IPR007527; Znf_SWIM.
DR PANTHER; PTHR31669; PROTEIN FAR1-RELATED SEQUENCE 10-RELATED; 1.
DR PANTHER; PTHR31669:SF162; SWIM-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF03101; FAR1; 1.
DR Pfam; PF10551; MULE; 1.
DR Pfam; PF04434; SWIM; 1.
DR SMART; SM00575; ZnF_PMZ; 1.
DR PROSITE; PS50966; ZF_SWIM; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00325};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00325}.
FT DOMAIN 827..874
FT /note="SWIM-type"
FT /evidence="ECO:0000259|PROSITE:PS50966"
FT REGION 149..242
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 265..340
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 977..1026
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1083..1110
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 161..177
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 194..214
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 215..236
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 286..300
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 312..335
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1085..1102
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1144 AA; 129919 MW; C4A9B30D74987337 CRC64;
MMEVVKKDAV GGKWRVSKLV VEHNHELEVA PGEVAAAVPV LGMEFDSVHA AKGFYYGYGD
RLGFKARTGS NRRSVGNGVM IMQRFLCSRG NYANRRNKAN GLDELKEEEV QECAAGKRKR
GANNKKKDCK PVKNGSEVIE VGSSVEKGVG IAGSKNGQEM RKTRGSTRGR SKKDVIQKDG
GSVVQLEAER EDMAMAQDGD DDEEQEQKWE EEMEEEVQVE VKGKRGRGRP RKADTDGNAL
QARVLRELGL RASQYTNEER KKIVNKYLSK RQSRPVSGRP AKIASRQALA ERRKRGDGGR
FLASEGLAPP EQPSERRSKR LEKQNLKKED KDESKEDEII EVEPDPETEV VAGPGGEPKV
GMVFLNEDKA YDCYVTYAGT VGFSVRKGWL EKTATNITRS RAYVCSKEGF RSKSVTTDPK
KPRSETRTGC QAHMTIKITV SSKYVVTEYA ADHNHDLEAP LVDIQVLRSQ KLLAKLQQPL
DPPRVVFIPH DYKNYARTRQ SKDMQLGDAQ VICEYLQRKK GEHPSFFYAI QVDEDDQLTN
IFWADVKSIL DYNYFGDVVC VDTRYSTGNH VRPLLLFIGV NHHKQPIIFG AALVYYESVE
SFKWLLETFK SAMSGKQPKT VMIDQSTAIS EAVGSVWPGT TQRFSLIHLY ENATKILNNT
FQASETFAED FSRWLYCYEE EEDFMSSWEI LSEKYNLKDN EWLGKLYADR ERWALPYGRD
TFCADIAATL RSDNNTDTML ADILKKEMDF PSFFNNYDKL LEEKRLAEQQ ADYLGVQMTQ
RIAPLRMLWQ AANAYTPALF EMFRLEFELT LTCMVYSCGE IAPISEYEVT VKNRPRGHFV
RFDSSECMVA CSCKKFEFTG IPCCHVLKVL EVRNIKELPP HYILKRWRKD AQSESPKENY
GFEAADGDPK FSLSKRYNML YRMLCKIAAK AAENIEAYTY MESQYDQFLE QVELLLQAKL
HDRSSLSTIM KVQQQNLLPE ASNSEPRRVS SKKNKNVEMR RQQQSPIQSN KKKKGRQGLL
EPEEAEVPLR VDPATISNDI PNHLRTPTSQ FLAPSHIIQA PYVAQQFGLG SLQGFPGISP
FGQETAPAPL QQPHLQQPPF HSGPQIPQAP PPDIQSLQFL SSNPQLGHQT TDQSQYTIPV
WDFL
//
