ID J3ML19_ORYBR Unreviewed; 1014 AA.
AC J3ML19;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G21010.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB07G21010.1};
RN [1] {ECO:0000313|EnsemblPlants:OB07G21010.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB07G21010.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB07G21010.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:13066;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family.
CC {ECO:0000256|ARBA:ARBA00007913}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01341}.
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DR AlphaFoldDB; J3ML19; -.
DR STRING; 4533.J3ML19; -.
DR EnsemblPlants; OB07G21010.1; OB07G21010.1; OB07G21010.
DR Gramene; OB07G21010.1; OB07G21010.1; OB07G21010.
DR eggNOG; KOG1802; Eukaryota.
DR HOGENOM; CLU_001666_4_3_1; -.
DR OMA; VRSNDNQ; -.
DR Proteomes; UP000006038; Chromosome 7.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR CDD; cd21407; 1B_UPF1-like; 1.
DR CDD; cd18039; DEXXQc_UPF1; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 2.40.30.230; -; 1.
DR Gene3D; 6.10.140.1240; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR006935; Helicase/UvrB_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR InterPro; IPR040812; UPF1_1B_dom.
DR InterPro; IPR018999; UPF1_CH/ZBD.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF364; REGULATOR OF NONSENSE TRANSCRIPTS 1; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF04851; ResIII; 1.
DR Pfam; PF18141; UPF1_1B_dom; 1.
DR Pfam; PF09416; UPF1_Zn_bind; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51997; UPF1_CH_RICH; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038}.
FT DOMAIN 1..51
FT /note="Upf1"
FT /evidence="ECO:0000259|PROSITE:PS51997"
FT DOMAIN 257..389
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT REGION 797..855
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 960..983
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 815..830
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 837..855
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 961..975
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1014 AA; 111617 MW; 0CEF8AAF721F209B CRC64;
MNWDLSQWCP LIDDRCFLSW LVKVPSEQEQ LRARQISAQQ INKVEELWKT NPDASLEDLE
KPGVDDEPQQ VALKYEDAYQ YQNVFAPLIK LEADYDKMMK ESQSKDSLTV RWDIGLNKKR
IAYFVFPKED NELRLVPGDE LRLRYSGDSS HPAWQSVGHV IKLTAQEEVA LELRASQGVP
VDLNHGFSVD FVWKSTSFDR MQGAMKTFAV DETSVSGYIY HHLLGHEVEH QIIRNTLPRR
FGAPGLPELN ASQVLAVKSV LQKPISLIQG PPGTGKTVTS AAIVYHMAKQ GQGQVLVCAP
SNVAVDQLAE KISSTGLKVV RLCAKSREAV SSPVEHLTLH YQVRHLDTSE KSELHKLQQL
KDEQGELSSS DEKKYKALKR ATEREILQSA DVICCTCVGA GDPRLANFRF RQVLIDESTQ
ATEPECLIPL VLGVKQVVLV GDHCQLGPVI MCKKAARAGL AQSLFERLVI LGVKPFRLQV
QYRMHPCLSD FPSNCFYEGT LQNGVTVNER QTPGIDFPWP VPNRPMFFYV QMGQEEISAS
GTSYLNRTEA ANVEKIVTTF LRSGVVPSQI GVITPYEGQR AYIVNYMSRN GSLRQQLYKE
IEVASVDSFQ GREKDYIILS CVRSNEHQGI GFLNDPRRLN VALTRARYGI VILGNPKVLS
KQPLWNSLLT HYKEHECLVE GPLNNLKQSM VQFQKPKKIY NDRRLFLGGG QGVMQGASFG
AAGTNLVGDK RSGRGKGHSF VPFGPPNGAH KPGVHPSGYP LPRMPFPPFA GAHSQPYAIP
TRGSLHGPIG AVPPVPQPGN RNFGPRGNTG GPIGGHLAHQ QNSQQAMGGI GTAFSFPGLE
NPSSQPSGGG PMSQTGLMTQ MPVQGLSQTF RDGFSIGGMS QDFFGDDFKS QGSHVAYNIA
DFSTQASQGG YGVDYSQGPQ SGYPGNYLNQ NTHPGYSHMG AANDIVSQDP MAHGSHGMFT
QAGYNDPSQD ESSQMHFGMA GPGPLQSQAM MNPLYSQSYA HYNTQPQSLQ PPPQ
//
