ID J4NU06_9FIRM Unreviewed; 269 AA.
AC J4NU06;
DT 31-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 31-OCT-2012, sequence version 1.
DT 24-JAN-2024, entry version 50.
DE SubName: Full=RNA polymerase sigma-H factor {ECO:0000313|EMBL:EJO22337.1};
GN Name=sigH {ECO:0000313|EMBL:EJO22337.1};
GN ORFNames=HMPREF1148_0896 {ECO:0000313|EMBL:EJO22337.1};
OS Selenomonas sp. FOBRC6.
OC Bacteria; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae;
OC Selenomonas.
OX NCBI_TaxID=936572 {ECO:0000313|EMBL:EJO22337.1, ECO:0000313|Proteomes:UP000006984};
RN [1] {ECO:0000313|EMBL:EJO22337.1, ECO:0000313|Proteomes:UP000006984}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=FOBRC6 {ECO:0000313|EMBL:EJO22337.1,
RC ECO:0000313|Proteomes:UP000006984};
RA Durkin A.S., McCorrison J., Torralba M., Gillis M., Methe B., Sutton G.,
RA Nelson K.E.;
RL Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJO22337.1}.
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DR EMBL; ALKG01000102; EJO22337.1; -; Genomic_DNA.
DR RefSeq; WP_009441869.1; NZ_ALKG01000102.1.
DR AlphaFoldDB; J4NU06; -.
DR STRING; 936572.HMPREF1148_0896; -.
DR PATRIC; fig|936572.3.peg.1452; -.
DR eggNOG; COG1595; Bacteria.
DR Proteomes; UP000006984; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.20.120.1810; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR014218; RNA_pol_sigma-H.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR000792; Tscrpt_reg_LuxR_C.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR NCBIfam; TIGR02859; spore_sigH; 1.
DR PANTHER; PTHR30385:SF1; RNA POLYMERASE SIGMA-H FACTOR; 1.
DR PANTHER; PTHR30385; SIGMA FACTOR F FLAGELLAR; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
DR PROSITE; PS00622; HTH_LUXR_1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 209..236
FT /note="HTH luxR-type"
FT /evidence="ECO:0000259|PROSITE:PS00622"
SQ SEQUENCE 269 AA; 31027 MW; B883407EBF066918 CRC64;
MIFYGDKQKS MLDEEQASAD ELEACDLEAE EEESDEVGAE SSVYDGCTDE ELLAHIRSCE
GDEALDYLIN KYRNFVRSKA RSYFLIGADR EDIVQEGMIG FFKAIRDYRE DKLSSFRAFA
ELCVTRQIIT AIKTATRQKH IPLNSYVSLN KPIYDEDSDR TLLDVLSGAR ISDPEELVIS
HEEFIDIEQK MEEILSDLEW RVLMSYLDGK SYQEIAVDLH RQVKSIDNAL QRVKRKLEKY
MESRGDDLDI GTVYRGLTTI NRGVRMPEE
//
