ID J9IZ93_9SPIT Unreviewed; 546 AA.
AC J9IZ93;
DT 31-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 31-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE SubName: Full=Protein tipD {ECO:0000313|EMBL:EJY81563.1};
GN ORFNames=OXYTRI_20923 {ECO:0000313|EMBL:EJY81563.1};
OS Oxytricha trifallax.
OC Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea;
OC Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha.
OX NCBI_TaxID=1172189 {ECO:0000313|EMBL:EJY81563.1};
RN [1] {ECO:0000313|EMBL:EJY81563.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JRB310 {ECO:0000313|EMBL:EJY81563.1};
RX PubMed=23382650; DOI=10.1371/journal.pbio.1001473;
RA Swart E.C., Bracht J.R., Magrini V., Minx P., Chen X., Zhou Y.,
RA Khurana J.S., Goldman A.D., Nowacki M., Schotanus K., Jung S., Fulton R.S.,
RA Ly A., McGrath S., Haub K., Wiggins J.L., Storton D., Matese J.C.,
RA Parsons L., Chang W.J., Bowen M.S., Stover N.A., Jones T.A., Eddy S.R.,
RA Herrick G.A., Doak T.G., Wilson R.K., Mardis E.R., Landweber L.F.;
RT "The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome
RT with 16,000 Tiny Chromosomes.";
RL PLoS Biol. 11:E1001473-E1001473(2013).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJY81563.1}.
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DR EMBL; AMCR01006721; EJY81563.1; -; Genomic_DNA.
DR AlphaFoldDB; J9IZ93; -.
DR EnsemblProtists; EJY81563; EJY81563; OXYTRI_20923.
DR OrthoDB; 180040at2759; -.
DR GO; GO:0000045; P:autophagosome assembly; IEA:InterPro.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR045160; ATG16.
DR InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR PANTHER; PTHR19878:SF8; AUTOPHAGY-RELATED 16, ISOFORM F; 1.
DR Pfam; PF08614; ATG16; 1.
DR Pfam; PF00400; WD40; 3.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 2.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 11..191
FT /note="Autophagy-related protein 16"
FT /evidence="ECO:0000259|Pfam:PF08614"
FT REPEAT 256..297
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 298..339
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 340..381
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 424..465
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT COILED 33..60
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 95..150
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 546 AA; 63105 MW; 7519F1632C4DC8DB CRC64;
MYCPVNLQQK YLKQVQERNR HEKSQFKEVV HHYMDILRQL KKIQDQNKQL ERENYAIKQT
KGDAMQMVKM EQHVRELEAQ LNDMYKGQMG NSQEVLKQVR ENKDLADKLR DYEKKSTLYQ
ERLKEYEDIM ARQQEEYDRM EQQHRVMKSE YDGMKQINQH LEGRVKELSM DNSNLVSKIL
SLKDEQAKAL NEANKIYMEA QRIKGGGDPK KVGSQEEEKQ QISFGSPINL DEFIKPEYLI
PNFAEIKVPS KTQFKIPAHK REVTCVCFNP LGDAIATGGG DALIKIWNAN TGKEDACLRG
FQKPITDIQI SMDNELLAAS STEHKTLIWS LKTKRATQTF QGHKDTINAN KFSFSKKSVI
TGSLDRTIKF WDLEKGICSK TIVCMSQCFD LNLSISESMM ATAHFDGAIR LWSLRGQELL
HEIKNAHDNS ITCVKFSPDE KYFVSTGTDH TVRVFDTRTY KMLQKFEHEN YKCGSQSNKL
CISSNSRYVV LGSLNGNIII YDIQNGELEE IYEHIHQTTV VACEWQPRGT KFASIDNLGG
LYLWEP
//
