ID J9J754_9SPIT Unreviewed; 711 AA.
AC J9J754;
DT 31-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 31-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE SubName: Full=IBR domain containing protein {ECO:0000313|EMBL:EJY85878.1};
GN ORFNames=OXYTRI_16134 {ECO:0000313|EMBL:EJY85878.1};
OS Oxytricha trifallax.
OC Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea;
OC Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha.
OX NCBI_TaxID=1172189 {ECO:0000313|EMBL:EJY85878.1};
RN [1] {ECO:0000313|EMBL:EJY85878.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JRB310 {ECO:0000313|EMBL:EJY85878.1};
RX PubMed=23382650; DOI=10.1371/journal.pbio.1001473;
RA Swart E.C., Bracht J.R., Magrini V., Minx P., Chen X., Zhou Y.,
RA Khurana J.S., Goldman A.D., Nowacki M., Schotanus K., Jung S., Fulton R.S.,
RA Ly A., McGrath S., Haub K., Wiggins J.L., Storton D., Matese J.C.,
RA Parsons L., Chang W.J., Bowen M.S., Stover N.A., Jones T.A., Eddy S.R.,
RA Herrick G.A., Doak T.G., Wilson R.K., Mardis E.R., Landweber L.F.;
RT "The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome
RT with 16,000 Tiny Chromosomes.";
RL PLoS Biol. 11:E1001473-E1001473(2013).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJY85878.1}.
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DR EMBL; AMCR01002681; EJY85878.1; -; Genomic_DNA.
DR AlphaFoldDB; J9J754; -.
DR EnsemblProtists; EJY85878; EJY85878; OXYTRI_16134.
DR OrthoDB; 180247at2759; -.
DR GO; GO:0004842; F:ubiquitin-protein transferase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0016567; P:protein ubiquitination; IEA:InterPro.
DR CDD; cd20335; BRcat_RBR; 1.
DR CDD; cd22584; Rcat_RBR_unk; 1.
DR Gene3D; 1.20.120.1750; -; 1.
DR Gene3D; 2.20.25.20; -; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR031127; E3_UB_ligase_RBR.
DR InterPro; IPR002867; IBR_dom.
DR InterPro; IPR044066; TRIAD_supradom.
DR InterPro; IPR027370; Znf-RING_euk.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR11685; RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING; 1.
DR PANTHER; PTHR11685:SF457; TRANSLATION TERMINATION INHIBITOR PROTEIN ITT1; 1.
DR Pfam; PF01485; IBR; 2.
DR Pfam; PF13445; zf-RING_UBOX; 1.
DR SMART; SM00647; IBR; 2.
DR SUPFAM; SSF57850; RING/U-box; 3.
DR PROSITE; PS51873; TRIAD; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 405..613
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS51873"
FT DOMAIN 409..454
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REGION 682..711
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 617..644
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 688..711
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 711 AA; 82260 MW; 5CA0B1E7C40BD621 CRC64;
MNEQKRQRLG MYLNVINQSK AKLDYQDCFM LGIAFSNFTK NGEDLEDVVT SIQENKKSLR
GVALNDNQKL DNRIKFLEDI QDGIPAQLLN QQKPKPHNGN AQTLNSNLKK RSYEETGLKK
SEDEIKILAE NDFHSQNGKR KVIQISEIEF QSDEEEGRSV PIQRKLDNIP SFTDDSLSNS
VFKKNSFDKK SSANSASVSG NGLGFINNEK ISDLNQAIDS LDNTQFRGSI KAGSKSAGSH
NDLSQELPLN TNLQDNSQKV YSSMSQNVDV QMLQEKEQGF DISPNDQNGG QIHKEFSFNH
LRGSSTGIAF AESIEMIDTS TNRNKNQYYN QLDNKNKQAN QFVVDDDDLL ELLEEEKGLN
FGIQNNFEIQ GSIDPLTKDL ILKLQEEEEQ ERNNLLKQKD EHIDENFKCP VCFDGYDEEN
ILPLTSCDHV FHRECLQIYL NGEIQESKFP LKCPENACQK ELLIEDLNDI LSEEQRQKHL
EFTFNQAIAQ QQDMMWCPTA DCKNVLVIEE GVNELHCDQC NKDYCGQCKV EYHKERTCAQ
FQAENQNDKE FLEFVKGKQF KQCPFCQFWV EKSEGCDHMT CKCKKEFCYK CGGVYRACEC
TKENQRQEAL RRQRFQEARR IARIKRAEQL KRELEKEKQS RQIIQIFSNN QTLSIQINIA
QRKRKGEART LSQIAQNWGN SFGDTHQEQY KESARIYRER KDVPIKRNNR Q
//