ID K0T1P3_THAOC Unreviewed; 1388 AA.
AC K0T1P3;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=Chromatin-remodeling complex ATPase chain {ECO:0008006|Google:ProtNLM};
DE Flags: Fragment;
GN ORFNames=THAOC_05886 {ECO:0000313|EMBL:EJK72568.1};
OS Thalassiosira oceanica (Marine diatom).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=159749 {ECO:0000313|EMBL:EJK72568.1, ECO:0000313|Proteomes:UP000266841};
RN [1] {ECO:0000313|EMBL:EJK72568.1, ECO:0000313|Proteomes:UP000266841}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1005 {ECO:0000313|EMBL:EJK72568.1,
RC ECO:0000313|Proteomes:UP000266841};
RX PubMed=22835381; DOI=10.1186/gb-2012-13-7-r66;
RA Lommer M., Specht M., Roy A.S., Kraemer L., Andreson R., Gutowska M.A.,
RA Wolf J., Bergner S.V., Schilhabel M.B., Klostermeier U.C., Beiko R.G.,
RA Rosenstiel P., Hippler M., Laroche J.;
RT "Genome and low-iron response of an oceanic diatom adapted to chronic iron
RT limitation.";
RL Genome Biol. 13:R66-R66(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJK72568.1}.
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DR EMBL; AGNL01005642; EJK72568.1; -; Genomic_DNA.
DR EnsemblProtists; EJK72568; EJK72568; THAOC_05886.
DR eggNOG; KOG0385; Eukaryota.
DR Proteomes; UP000266841; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR CDD; cd00084; HMG-box_SF; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR015195; SLIDE.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR PANTHER; PTHR45623:SF49; SWI_SNF RELATED, MATRIX ASSOCIATED, ACTIN DEPENDENT REGULATOR OF CHROMATIN, SUBFAMILY A, MEMBER 1; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF09011; HMG_box_2; 1.
DR Pfam; PF09111; SLIDE; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000266841}.
FT DOMAIN 27..99
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 367..536
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 683..834
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT DNA_BIND 27..99
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 47..243
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 277..341
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1012..1072
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1338..1388
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1245..1272
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 70..137
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 170..190
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 191..243
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 277..293
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1019..1033
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1041..1072
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1351..1378
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1388
FT /evidence="ECO:0000313|EMBL:EJK72568.1"
SQ SEQUENCE 1388 AA; 157739 MW; ECEACC6F6E9D5015 CRC64;
MSSKKEDRSG WVAVGSDAHA DTGPPPIRPA RSAYHYFQKE NAKRIQAELT SSGKSSDVGA
LGREVSSRWQ TLTPDERRPY EVSAAADRDR FAAESHRRDV EVSAAREARR RERETLILDD
QGEGKRAKKE EKKRARKAEA ARSKKKTKKR GRGDDDDDSD YDESAGGGPS SDEASYSPSS
SEASSASSVS SSDEEEERPR KKRVVKLSES ALKRRAEARA QKAEKEAYIE QRQSDVREEK
AAQAKRRLEF LLKQSDIFSH FGNVKAEKAR LGLKSSEAMN TSGLEQRGSR VGTSDGSGGE
DRGAGTPGIV RKPSSVSGAE VQEEVEAERD EVDEHEATRM ASTGEFARES VVGFLWLSFE
LTLASMPCAY SAPARSILAD EMGLGKTMQS ISILVYMMEY KQDTGPHLII VPKSTLSNWM
NELARWGPTL NVVKFHGNKE ERADIAENVL RPGQRDEERS WNVCVTTYEI VNLDRNVVNK
FAWSYLVIDE AHRLKNEAST FSRVVRTLET RFRLNNRKCF YHTLSRPLPR TQTLLLVHEL
WALLNFLVPD VFASSEQFDE WFNLDIADDN EKSQLISQLH KILRPFMLRR LKADVEKSLP
PKVETILFTG MSAMQKKLYK DILMRDLDTL TGKGGSGSRT AVLNIVMQLR KCAGHPYLFP
GVEDRTLDPL GEHLVENCGK LVLLDKLLVR LRERGHRVLV FTQMTRILDI MEDYMHMRGF
KYCRIDGNTS YEDREARIDS YNKPDSEQFC FLLSTRAGGL GINLQTADVV ILYDSDWNPQ
ADLQAQDRAH RIGQKREVQV FRLVTEDTIE QKVVERAQQK LKLDAMVVQQ GRLKEKDKLS
REELLDAIRF GADKIFKSKD SSITDDDIDL ILDAGKKKTQ ELNDKLQEAK KGDMLDFKLD
GGISAQTFEG VDYSKEEAKS HLFQEEIFGI LDMGKRERRN VAYNENQLYM QQVKATQQQK
KATKKKEVRL PRAYRLPKME DCQMFDREAL NALQDVAEKA FRALPEEVQL AAGGYKVPKP
DKSKQDSDDS QLGSDYRPND SSGKTDADDK KDTTEQQDAS SDKKKLELPP LLTEEQEAEK
ARLLAEGFID WSRHHYTAFL KGSGRYGRTN YAKIANEVGK PASAVETYAK AFWDEEYGKK
RLGENEYERA VKHIEKGEKK IDDIKGLQRG TRILISLFEN PWVELQFTHV NTKDKKFSPE
EDRYLLCWAH KFGYGQWEAI KFAIRRSSNF RFDYFLKSLP PDALGRRCEQ LMRAAEKEID
MMEKAVREEA EKEGRTLPEG EIKLPMFKEL QAKKRLDAEK KFLEERTALE DNLRNIDAQI
EEIQRKLLET DGVQKIDSFF KPNSSAKPKS KATSEHGKTA KMKQQAGKKR KAGEEGGQEK
EGGAPGPG
//
