ID K3Y4S3_SETIT Unreviewed; 1174 AA.
AC K3Y4S3;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE RecName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 {ECO:0008006|Google:ProtNLM};
GN Name=101786650 {ECO:0000313|EnsemblPlants:KQK96480};
GN ORFNames=SETIT_7G030800v2 {ECO:0000313|EMBL:RCV32785.1};
OS Setaria italica (Foxtail millet) (Panicum italicum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX NCBI_TaxID=4555 {ECO:0000313|EMBL:RCV32785.1};
RN [1] {ECO:0000313|EMBL:RCV32785.1, ECO:0000313|Proteomes:UP000004995}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQK96480,
RC ECO:0000313|Proteomes:UP000004995}, and Yugu1
RC {ECO:0000313|EMBL:RCV32785.1};
RX PubMed=22580951; DOI=10.1038/nbt.2196;
RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT "Reference genome sequence of the model plant Setaria.";
RL Nat. Biotechnol. 30:555-561(2012).
RN [2] {ECO:0000313|EMBL:RCV32785.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Yugu1 {ECO:0000313|EMBL:RCV32785.1};
RA Noorani M.;
RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQK96480}
RP IDENTIFICATION.
RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQK96480};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; AGNK02004164; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM003534; RCV32785.1; -; Genomic_DNA.
DR RefSeq; XP_004975132.2; XM_004975075.2.
DR AlphaFoldDB; K3Y4S3; -.
DR STRING; 4555.K3Y4S3; -.
DR EnsemblPlants; KQK96480; KQK96480; SETIT_009211mg.
DR GeneID; 101786650; -.
DR Gramene; KQK96480; KQK96480; SETIT_009211mg.
DR KEGG; sita:101786650; -.
DR eggNOG; KOG1001; Eukaryota.
DR HOGENOM; CLU_000315_2_5_1; -.
DR InParanoid; K3Y4S3; -.
DR OMA; LTSHCRW; -.
DR OrthoDB; 11932at2759; -.
DR Proteomes; UP000004995; Chromosome VII.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0008094; F:ATP-dependent activity, acting on DNA; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR014905; HIRAN.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR015940; UBA.
DR InterPro; IPR009060; UBA-like_sf.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF22; DNA REPAIR PROTEIN RAD5; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF08797; HIRAN; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF13920; zf-C3HC4_3; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00910; HIRAN; 1.
DR SMART; SM00184; RING; 1.
DR SMART; SM00165; UBA; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR SUPFAM; SSF46934; UBA-like; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50030; UBA; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000004995};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 22..63
FT /note="UBA"
FT /evidence="ECO:0000259|PROSITE:PS50030"
FT DOMAIN 576..767
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 938..979
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1009..1169
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 63..175
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 129..147
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1174 AA; 129893 MW; 371F64C5B73D56A0 CRC64;
MPVSVDDDSS GWQVSPSQAV LFADEIAAVR AVLGAGLPEA RVVAALSRCG GNTERAVNAL
LDDSAGAAEV GPTSEGRGAP KPVKAERDVG GAPPPAKVKA EDPVDEDVGS QDSDAASAKA
AAKVKSEPLV VPHRVKKEEK PAADARDAPR RGAAAAAASV GGGISLVPRP KKRPREEVVE
TIDLTTTHPV PYLNPRPIRA LPPPGGAETC DPRPILVVPP LDVQMYDAGP VLPAPPPPVD
VEMYEPRARA PAPTLPRPLR AIAPAPVTDL RMVVAPPDAE FGDFPEERDF FLVGKSYVPG
LSTNRGRRRM DAGEIVHFAF PSYERSYGGL KLSAKKVKAL AGIVRFSTKR AGEIGKLPPE
WSECLVPLVN SSKVKIHGKV VFPTIELRLM QEVMLYVSLY IHKSVFTEMD NSSCDMLYHV
NVSFSSSPLH QLLTLLKLKA SNKDDFSLGD LSSRKLQRIL RGNHNNGAES TSELGQTFLE
QGPDEQAISE AALNKLVGTA ETFDLEEAEP PSTLVSVLKP YQKQALFWMS KLEKGMDANE
ATKTLHPCWS AYNIADKRAP QVYVNIFTGQ TTTQFPSATG TARGGILADA MGLGKTVMTI
ALILSNPRGE CSNYTERDTR VLRDHGTRAH TSRSSVRGGT LIICPMPLLG QWKDELEAHS
TQGALSVFVH YGGDKTDNLM LMAEHDVVLT TYGVLSAAYK ADRTSIFHRM DWYRIVLDEA
HTIKSPKTKG AQAAFGLNSE CRWCLTGTPL QNNLEDLYSL FCFLHVEPWC SANWWQKLIQ
KPYENGDDRG LKIVRAILRP LMLRRTKETK DKIGKPILVL PPAHIEVVEC EQSEQERDFY
EALFRRSKVQ FDKFVAQGSV HNNYANILEL LLRLRQCCNH PFLVFSRADP QKYADLDQLA
QRFLEGVQSC SGRQNALPSR AYVEEVAEEI RQGATTECPI CLESASDDPV LTPCAHRMCR
ECLLSSWRTP DGGPCPLCRS HISKSDLIIL PAQCRFQVDA ENNWKDSCKV SKLIMILEGL
QKKREKSIVF SQFTSFFDLL EIPFNHKGIK FLRYDGKLNQ KHKEKVLKEF SESQDKLVLL
MSLKAGGVGL NLTAASNVFL MDPWWNPAVE EQAIMRIHRI GQKRAVQVRR FIVKDTVEER
MQQVQVRKQR MISGALTDEE VRGARIEQLK MLFT
//
