ID K3YPM2_SETIT Unreviewed; 989 AA.
AC K3YPM2;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 24-JAN-2024, entry version 65.
DE RecName: Full=Clp R domain-containing protein {ECO:0000259|PROSITE:PS51903};
GN ORFNames=SETIT_1G061300v2 {ECO:0000313|EMBL:RCV05168.1};
OS Setaria italica (Foxtail millet) (Panicum italicum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:KQL28427, ECO:0000313|Proteomes:UP000004995};
RN [1] {ECO:0000313|EMBL:RCV05168.1, ECO:0000313|Proteomes:UP000004995}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQL28427,
RC ECO:0000313|Proteomes:UP000004995}, and Yugu1
RC {ECO:0000313|EMBL:RCV05168.1};
RX PubMed=22580951; DOI=10.1038/nbt.2196;
RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT "Reference genome sequence of the model plant Setaria.";
RL Nat. Biotechnol. 30:555-561(2012).
RN [2] {ECO:0000313|EMBL:RCV05168.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Yugu1 {ECO:0000313|EMBL:RCV05168.1};
RA Noorani M.;
RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQL28427}
RP IDENTIFICATION.
RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQL28427};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- SIMILARITY: Belongs to the ClpA/ClpB family.
CC {ECO:0000256|ARBA:ARBA00008675, ECO:0000256|RuleBase:RU004432}.
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DR EMBL; AGNK02000087; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM003528; RCV05168.1; -; Genomic_DNA.
DR AlphaFoldDB; K3YPM2; -.
DR STRING; 4555.K3YPM2; -.
DR EnsemblPlants; KQL28427; KQL28427; SETIT_016214mg.
DR Gramene; KQL28427; KQL28427; SETIT_016214mg.
DR eggNOG; KOG1051; Eukaryota.
DR HOGENOM; CLU_005070_4_0_1; -.
DR InParanoid; K3YPM2; -.
DR OMA; IDLHYTK; -.
DR OrthoDB; 35211at2759; -.
DR Proteomes; UP000004995; Chromosome I.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR GO; GO:0034605; P:cellular response to heat; IBA:GO_Central.
DR GO; GO:0042026; P:protein refolding; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd19499; RecA-like_ClpB_Hsp104-like; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.1780.10; Clp, N-terminal domain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 3.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR017730; Chaperonin_ClpB.
DR InterPro; IPR019489; Clp_ATPase_C.
DR InterPro; IPR036628; Clp_N_dom_sf.
DR InterPro; IPR004176; Clp_R_dom.
DR InterPro; IPR001270; ClpA/B.
DR InterPro; IPR018368; ClpA/B_CS1.
DR InterPro; IPR028299; ClpA/B_CS2.
DR InterPro; IPR041546; ClpA/ClpB_AAA_lid.
DR InterPro; IPR027417; P-loop_NTPase.
DR NCBIfam; TIGR03346; chaperone_ClpB; 1.
DR PANTHER; PTHR11638; ATP-DEPENDENT CLP PROTEASE; 1.
DR PANTHER; PTHR11638:SF86; CHAPERONE PROTEIN CLPB4, MITOCHONDRIAL; 1.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF07724; AAA_2; 1.
DR Pfam; PF17871; AAA_lid_9; 1.
DR Pfam; PF02861; Clp_N; 2.
DR Pfam; PF10431; ClpB_D2-small; 1.
DR PRINTS; PR00300; CLPPROTEASEA.
DR SMART; SM00382; AAA; 2.
DR SMART; SM01086; ClpB_D2-small; 1.
DR SUPFAM; SSF81923; Double Clp-N motif; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS51903; CLP_R; 1.
DR PROSITE; PS00870; CLPAB_1; 1.
DR PROSITE; PS00871; CLPAB_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|RuleBase:RU004432};
KW Chaperone {ECO:0000256|ARBA:ARBA00023186, ECO:0000256|RuleBase:RU004432};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741,
KW ECO:0000256|RuleBase:RU004432};
KW Reference proteome {ECO:0000313|Proteomes:UP000004995};
KW Repeat {ECO:0000256|ARBA:ARBA00022737, ECO:0000256|PROSITE-
KW ProRule:PRU01251}.
FT DOMAIN 103..246
FT /note="Clp R"
FT /evidence="ECO:0000259|PROSITE:PS51903"
FT COILED 512..633
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 989 AA; 109420 MW; A56C4209C4009F9F CRC64;
MARSAASRLA RAARAAAAAT ARRQAPGASR EVLPRALAPL AGDASAFAAA ATRRPAWFAA
PLGRFPVGAG GAGLMAPPRR LFHSTAPAQH SAAGTSSSSQ IAPGEFTEMA WEGIVGAVDA
ARLSKQQIVE SEHLMKALLE QKDGLARRIF SKAGVDNTSV LQATDEFISR QPKVSGDTSG
PIIGSSFVSI LDSAKKHKKE YGDEFVSVEH ILQAFTSDKR FGQQLFKDLK IMENDLKEAI
SAVRGSQRVT DQNPEGKYQA LEKYGIDLTE SARRGKLDPV IGRDDEVRRC IQILCRRTKN
NPVIIGEPGV GKTAIAEGLA QRIVRGDVPE PLMNRRLISL DMGALLAGAK FRGEFEERLK
AVLKEVTASN GQIILFIDEI HTVVGAGAAG GAMDAGNLLK PMLGRGELRC IGATTLDEYR
KYIEKDAALE RRFQQVYCGE PAVEDTISIL RGLRERYELH HGVKISDGAL VAAAVLSDRY
ITGRFLPDKA IDLVDEAAAK LKMEITSKPI ELDEVDREII RLEMEKLSLK NDTDKASKER
LSKLEAELES LKQKQKNLSE HWEYEKSLMT RIGSIKEETD RVNLEIEAAE REYDLSRAAE
LKYGTLLSLQ KQLEEAENKL VEFQQSGKSM LREEVTDVDI AEIVSKWTGI PVSNLQQSER
EKLLLLEDVL HKRVIGQDIA VKSVANAIRR SRAGLSDPNR PIASFMFMGP TGVGKTELGK
TLAEFLFNTE NALIRIDMSE YMEKHAVSRL VGAPPGYVGY EEGGQLTESV RRRPYSVVLF
DEIEKAHQDV FNILLQLLDD GRITDSQGRT VSFTNCVIIM TSNIGSPLIL DTLRNTTDSK
EAVYEIMKKQ VIEMARQTFR PEFLNRIDEY IVFQPLDTSE INHIVEIQLN RVKNRLKQQK
IRLQYTPEAV ELLGSLGFDP NYGARPVKRV IQQMVENEIA LGVLKGDFKE DDTILVDVSS
AAIAKGLAPQ KKLVLQRVEN RSEELVAND
//