ID K3YRW2_SETIT Unreviewed; 497 AA.
AC K3YRW2;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 64.
DE RecName: Full=SWIRM domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=101753541 {ECO:0000313|EnsemblPlants:KQL28317};
GN ORFNames=SETIT_1G051900v2 {ECO:0000313|EMBL:RCV05067.1};
OS Setaria italica (Foxtail millet) (Panicum italicum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX NCBI_TaxID=4555 {ECO:0000313|EMBL:RCV05067.1};
RN [1] {ECO:0000313|EMBL:RCV05067.1, ECO:0000313|Proteomes:UP000004995}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQL28317,
RC ECO:0000313|Proteomes:UP000004995}, and Yugu1
RC {ECO:0000313|EMBL:RCV05067.1};
RX PubMed=22580951; DOI=10.1038/nbt.2196;
RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT "Reference genome sequence of the model plant Setaria.";
RL Nat. Biotechnol. 30:555-561(2012).
RN [2] {ECO:0000313|EMBL:RCV05067.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Yugu1 {ECO:0000313|EMBL:RCV05067.1};
RA Noorani M.;
RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQL28317}
RP IDENTIFICATION.
RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQL28317};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
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DR EMBL; AGNK02000067; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM003528; RCV05067.1; -; Genomic_DNA.
DR RefSeq; XP_004951592.1; XM_004951535.3.
DR AlphaFoldDB; K3YRW2; -.
DR STRING; 4555.K3YRW2; -.
DR EnsemblPlants; KQL28317; KQL28317; SETIT_017006mg.
DR GeneID; 101753541; -.
DR Gramene; KQL28317; KQL28317; SETIT_017006mg.
DR KEGG; sita:101753541; -.
DR eggNOG; KOG1279; Eukaryota.
DR HOGENOM; CLU_004447_5_0_1; -.
DR InParanoid; K3YRW2; -.
DR OMA; EESPCTI; -.
DR OrthoDB; 10062at2759; -.
DR Proteomes; UP000004995; Chromosome I.
DR GO; GO:0005634; C:nucleus; IEA:EnsemblPlants.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd00167; SANT; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR032451; SMARCC_C.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR12802; SWI/SNF COMPLEX-RELATED; 1.
DR PANTHER; PTHR12802:SF44; SWI_SNF COMPLEX SUBUNIT SWI3B; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF04433; SWIRM; 1.
DR Pfam; PF16495; SWIRM-assoc_1; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR PROSITE; PS51294; HTH_MYB; 1.
DR PROSITE; PS50090; MYB_LIKE; 1.
DR PROSITE; PS51293; SANT; 1.
DR PROSITE; PS50934; SWIRM; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000004995}.
FT DOMAIN 75..176
FT /note="SWIRM"
FT /evidence="ECO:0000259|PROSITE:PS50934"
FT DOMAIN 249..300
FT /note="SANT"
FT /evidence="ECO:0000259|PROSITE:PS51293"
FT DOMAIN 251..296
FT /note="Myb-like"
FT /evidence="ECO:0000259|PROSITE:PS50090"
FT DOMAIN 251..288
FT /note="HTH myb-type"
FT /evidence="ECO:0000259|PROSITE:PS51294"
FT REGION 1..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 475..497
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 399..426
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 25..39
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 497 AA; 54170 MW; B087193011D7FC33 CRC64;
MATTTATVTA PAPAPAANAN FVPTPTAPHP RPAAPPASRA PSTLGPVKSE APPAPSSTTS
AAAAASGPED PSYIITVPSY SAWFSFDSIH DTERRLLPEF FEGEAAAASG CRGPGAYKYY
RDTLIRRFRA RPGRRLTLTE ARRGLVGDVG SVRRVFDFLE EWGLINYGAL PSGSKQAKEK
REEAAPQPSL PSGATAPRKL CTGCRSVCGL AYYACDKADI SLCARCFVCN NYRPGLTAAN
FKRIEITEDA KSDWTDKETL HLLEAVLHYG EDWKKVSEYV GSRSEKDCIA RFIQLPFGEQ
FMGPKEDRMG FENDGDITDE PGAHVSKRLR LTPLADASNP IMGQVAFLSA IVGSDAASAA
AQAAISAQSH VDLNDGEIDS SINSAMEEES SHTNGLSVND LLKEAATNAR AQLEKERSNI
EQSLSDIVDV QMKEIQDKIC RFEHKEMLME KERQQLRCLR DLLFADQLTV MQHHRRPQAV
ATESKLDEKP KPVVNIS
//
