ID K3YSC4_SETIT Unreviewed; 456 AA.
AC K3YSC4;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 24-JAN-2024, entry version 64.
DE RecName: Full=HMG box domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=101780173 {ECO:0000313|EnsemblPlants:KQL29622};
GN ORFNames=SETIT_1G158700v2 {ECO:0000313|EMBL:RCV06385.1};
OS Setaria italica (Foxtail millet) (Panicum italicum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX NCBI_TaxID=4555 {ECO:0000313|EMBL:RCV06385.1};
RN [1] {ECO:0000313|EMBL:RCV06385.1, ECO:0000313|Proteomes:UP000004995}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQL29622,
RC ECO:0000313|Proteomes:UP000004995}, and Yugu1
RC {ECO:0000313|EMBL:RCV06385.1};
RX PubMed=22580951; DOI=10.1038/nbt.2196;
RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT "Reference genome sequence of the model plant Setaria.";
RL Nat. Biotechnol. 30:555-561(2012).
RN [2] {ECO:0000313|EMBL:RCV06385.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Yugu1 {ECO:0000313|EMBL:RCV06385.1};
RA Noorani M.;
RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQL29622}
RP IDENTIFICATION.
RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQL29622};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
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DR EMBL; AGNK02000309; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM003528; RCV06385.1; -; Genomic_DNA.
DR RefSeq; XP_004952483.1; XM_004952426.3.
DR RefSeq; XP_012703127.1; XM_012847673.1.
DR AlphaFoldDB; K3YSC4; -.
DR STRING; 4555.K3YSC4; -.
DR EnsemblPlants; KQL29622; KQL29622; SETIT_017168mg.
DR GeneID; 101780173; -.
DR Gramene; KQL29622; KQL29622; SETIT_017168mg.
DR KEGG; sita:101780173; -.
DR eggNOG; KOG0381; Eukaryota.
DR eggNOG; KOG2744; Eukaryota.
DR HOGENOM; CLU_035371_1_0_1; -.
DR InParanoid; K3YSC4; -.
DR OMA; VKSDNRW; -.
DR OrthoDB; 316588at2759; -.
DR Proteomes; UP000004995; Chromosome I.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0090406; C:pollen tube; IEA:EnsemblPlants.
DR GO; GO:0000400; F:four-way junction DNA binding; IEA:EnsemblPlants.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IEA:EnsemblPlants.
DR GO; GO:0019760; P:glucosinolate metabolic process; IEA:EnsemblPlants.
DR GO; GO:0009846; P:pollen germination; IEA:EnsemblPlants.
DR GO; GO:0009860; P:pollen tube growth; IEA:EnsemblPlants.
DR CDD; cd16872; ARID_HMGB9-like; 1.
DR CDD; cd22009; HMG-box_AtHMGB9-like; 1.
DR Gene3D; 1.10.150.60; ARID DNA-binding domain; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR001606; ARID_dom.
DR InterPro; IPR036431; ARID_dom_sf.
DR InterPro; IPR045303; ARID_HMGB9-like.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR46691:SF3; HIGH MOBILITY GROUP B PROTEIN 15; 1.
DR PANTHER; PTHR46691; HIGH MOBILITY GROUP B PROTEIN 9; 1.
DR Pfam; PF01388; ARID; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM01014; ARID; 1.
DR SMART; SM00501; BRIGHT; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF46774; ARID-like; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS51011; ARID; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000004995}.
FT DOMAIN 60..151
FT /note="ARID"
FT /evidence="ECO:0000259|PROSITE:PS51011"
FT DOMAIN 272..339
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 272..339
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 173..198
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 236..279
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 340..456
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 253..267
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 340..363
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 375..391
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 399..424
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 430..456
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 456 AA; 50722 MW; 744AA05161623431 CRC64;
MSAPAPAAAA AAEEKAVANA AAAAKGKEKA EVLPVAAVAE PGRGRFVAYP APVAEHADVV
ADAARFRAVL ERLHAHMGTR LKVPIIGGKD LDLHQLYKEV TSRGGIDKVK AENRWREVTA
SFVFPATATN ASFMLKKYYM SLLYHFEQLY FFRVQGWYQE EIDSRTNSIE VKTKAQASHK
RKRGTNSSPS DPASSSDSVD VDVIIDGKFE HGYIVTVIMG SKSTKAILYN CTEEPALPTP
VPPAASNSTD LKGGRRRRRR RKKLSTTDPR HPKPNRSGYN FFFQDQHRIL KPQYPGQDRL
ISKMIGERWN NLSPEDKAVY QERGVQDKER YRTQLAAYKE EQRTGQPVSN AVPIQQRLPQ
TEVTIDEVDS KVSEGDMLLS NQGYSSSDES EHSGLKTVDE LNTDTSPEMS METTEMSMET
TGSPGHPDPS ADGDRFELRR REIPKADEKQ SMPPDP
//
